BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933179

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G28410.1 | Symbols:  | unknown protein; Has 18 Blast hits to...   538    1e-152


> AT2G28410.1 | Symbols:  | unknown protein; Has 18 Blast hits 
to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:12156130-12156934 FORWARD 
LENGTH=805
Length=805

 Score =  538 bits (291),  Expect = 1e-152
 Identities = 356/387 (92%), Gaps = 6/387 (2%)
 Strand=Plus/Plus

Query  1    ACACAAGCTGAGTGAGAGAAATGACTTCGAAAACATGTCTCAtcttcttcttctcttctc  60
            ||| ||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct  53   ACAGAAGCTGAGTTAGAGAAATGACTTCGAAAACATGCCTCGTCTTCTTCTTCTCTTCTC  112

Query  61   tAATTTTTACAAACTTCGCCTTAGCGCAAGACCGAGCTCCTCACGGATTGGCTTATGAGA  120
            |||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  113  TAATCTTAACAAACTTCGCCTTAGCGCAAGACCGAGCTCCTCACGGGTTGGCTTATGAGA  172

Query  121  CCCCAGTGGCATTTTCACCTTCTGCATTTGACTTCTTTCATGCACAACCAGAAAACCCGG  180
            ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct  173  CCCCAGTGGCATTTTCACCTTCTGCATTTGACTTCTTTCACACACAACCAGAAAACCCGG  232

Query  181  ATCCTACTTTAAACCCTTGCGTAG-AATCCGGCTGCTCGCCTCTCCCCGTTGCTGCAAAG  239
            |||| ||||| ||||||||| | | ||||||||||||| ||||| |||||||||||||||
Sbjct  233  ATCCCACTTTCAACCCTTGC-TCGGAATCCGGCTGCTCACCTCTTCCCGTTGCTGCAAAG  291

Query  240  GTCCAAGGAGCTTCTGCAAAAGCACAGGAAAGCGATATAGCATCAATGTCAATTGGTTCT  299
            ||||||||||||||||| |||||||||||||||||||||| |||||| |||| |||| | 
Sbjct  292  GTCCAAGGAGCTTCTGCGAAAGCACAGGAAAGCGATATAGTATCAATTTCAACTGGTACA  351

Query  300  AGAAGCGGAGTAGAAG--CTAGTCGTGTGGTTGGGATCATCTTTGGACTTGCGTTTGCGG  357
            ||||||||| ||||||  | | | |||||||||| |||||||||||||||||||||||||
Sbjct  352  AGAAGCGGAATAGAAGAAC-A-TGGTGTGGTTGGAATCATCTTTGGACTTGCGTTTGCGG  409

Query  358  TGCTGATGTGAACCATTATAGAGCATT  384
            || ||||||||||||||||||| ||||
Sbjct  410  TGATGATGTGAACCATTATAGATCATT  436



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18397996134


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5