BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg933179 Length=390 Score E Sequences producing significant alignments: (Bits) Value AT2G28410.1 | Symbols: | unknown protein; Has 18 Blast hits to... 538 1e-152 > AT2G28410.1 | Symbols: | unknown protein; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:12156130-12156934 FORWARD LENGTH=805 Length=805 Score = 538 bits (291), Expect = 1e-152 Identities = 356/387 (92%), Gaps = 6/387 (2%) Strand=Plus/Plus Query 1 ACACAAGCTGAGTGAGAGAAATGACTTCGAAAACATGTCTCAtcttcttcttctcttctc 60 ||| ||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 53 ACAGAAGCTGAGTTAGAGAAATGACTTCGAAAACATGCCTCGTCTTCTTCTTCTCTTCTC 112 Query 61 tAATTTTTACAAACTTCGCCTTAGCGCAAGACCGAGCTCCTCACGGATTGGCTTATGAGA 120 |||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 113 TAATCTTAACAAACTTCGCCTTAGCGCAAGACCGAGCTCCTCACGGGTTGGCTTATGAGA 172 Query 121 CCCCAGTGGCATTTTCACCTTCTGCATTTGACTTCTTTCATGCACAACCAGAAAACCCGG 180 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 173 CCCCAGTGGCATTTTCACCTTCTGCATTTGACTTCTTTCACACACAACCAGAAAACCCGG 232 Query 181 ATCCTACTTTAAACCCTTGCGTAG-AATCCGGCTGCTCGCCTCTCCCCGTTGCTGCAAAG 239 |||| ||||| ||||||||| | | ||||||||||||| ||||| ||||||||||||||| Sbjct 233 ATCCCACTTTCAACCCTTGC-TCGGAATCCGGCTGCTCACCTCTTCCCGTTGCTGCAAAG 291 Query 240 GTCCAAGGAGCTTCTGCAAAAGCACAGGAAAGCGATATAGCATCAATGTCAATTGGTTCT 299 ||||||||||||||||| |||||||||||||||||||||| |||||| |||| |||| | Sbjct 292 GTCCAAGGAGCTTCTGCGAAAGCACAGGAAAGCGATATAGTATCAATTTCAACTGGTACA 351 Query 300 AGAAGCGGAGTAGAAG--CTAGTCGTGTGGTTGGGATCATCTTTGGACTTGCGTTTGCGG 357 ||||||||| |||||| | | | |||||||||| ||||||||||||||||||||||||| Sbjct 352 AGAAGCGGAATAGAAGAAC-A-TGGTGTGGTTGGAATCATCTTTGGACTTGCGTTTGCGG 409 Query 358 TGCTGATGTGAACCATTATAGAGCATT 384 || ||||||||||||||||||| |||| Sbjct 410 TGATGATGTGAACCATTATAGATCATT 436 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18397996134 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5