BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933186
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28355.1 | Symbols: LCR5 | low-molecular-weight cysteine-ric... 409 8e-114
> AT2G28355.1 | Symbols: LCR5 | low-molecular-weight cysteine-rich
5 | chr2:12119320-12120279 FORWARD LENGTH=495
Length=495
Score = 409 bits (221), Expect = 8e-114
Identities = 259/276 (94%), Gaps = 8/276 (3%)
Strand=Plus/Plus
Query 6 TTCATTTATATCATCCATGATGAAGAAACCCATTCAACTCTCGTTAACTGTTATGATTAT 65
||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 53 TTCATTTATATCATCTATGATGAAGAAACTCATTCAACTCTCGTTCACTGTTATGATTAT 112
Query 66 CTTCACCATTCTTGCT-CTAGGAGTGGTGGCAAATGAGGGGCTAGGAAAACC---AAAAC 121
|||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct 113 CTTCACCATTCTTG-TGCTAGGAGTGGTGGCAAATGAGGGGCTAGGAAAACCAAAAAAAC 171
Query 122 AATGTCATGAGATTCTAAAGCAATCCAACTGTGTTGCTGCAGAGTGTGACTCTATGTGTG 181
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 AATGTAATGAGATTCTAAAGCAATCCAACTGTGTTGCTGCAGAGTGTGACTCTATGTGTG 231
Query 182 TGAAGAAGAGGGGGAAAGGAGCCGGTGTT-TGCACTACTTCTAAGAAGTGTTACTGCTAT 240
|||||||||||||||||||||||||| | ||| || ||||||| |||||||||||||||
Sbjct 232 TGAAGAAGAGGGGGAAAGGAGCCGGT-TACTGCTCTCCTTCTAAAAAGTGTTACTGCTAT 290
Query 241 TATCATTGCCCTTAATGATTTT-TTATTTACAATAA 275
||||||||||||||| |||||| |||||||||||||
Sbjct 291 TATCATTGCCCTTAACGATTTTATTATTTACAATAA 326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12617204999
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5