BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933188
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28340.1 | Symbols: GATA13 | GATA transcription factor 13 | ... 556 1e-157
> AT2G28340.1 | Symbols: GATA13 | GATA transcription factor 13
| chr2:12103672-12106172 FORWARD LENGTH=876
Length=876
Score = 556 bits (301), Expect = 1e-157
Identities = 493/584 (84%), Gaps = 20/584 (3%)
Strand=Plus/Plus
Query 26 ATGAGTAACGGTTCGTGGTTACCTGAAGAGGACTTCAAGGGTCTATCGGATAACTTCTTT 85
|||| ||||| || ||||||||||||||||||||||||||||||| ||||||| ||| ||
Sbjct 1 ATGAATAACGATTTGTGGTTACCTGAAGAGGACTTCAAGGGTCTACCGGATAATTTCCTT 60
Query 86 GATAATCTCATTGATCCTAATGATGATTTTTCTCTAGAAGACATCGAGACTGCCGATGAT 145
||||||||| ||||||||| ||||| ||||| ||||||| || ||||| | |||||||
Sbjct 61 GATAATCTCGTTGATCCTACCAATGATGTTTCTGTAGAAGATATAGAGACCGGCGATGAT 120
Query 146 GAGGGAGATTGGGATGCCGGGTTTCAAAACCTCGTACCTCCACCGTTGGATGTA-CTAAC 204
|||||||||||||||||| |||||||| |||||||||||||| ||||||| | ||||
Sbjct 121 GAGGGAGATTGGGATGCCAAATTTCAAAAGCTCGTACCTCCACCATTGGATG-AGCTAAT 179
Query 205 GAGTTTGTCCTCTGAGTTTTCTTGCAATGGACAGCGTGTGCCAGTCCAGAAGCCTGTACC 264
||||||||||| |||||| ||||||||||||||||||||| ||| ||||||| ||| ||
Sbjct 180 GAGTTTGTCCTATGAGTTCACTTGCAATGGACAGCGTGTGCAAGTTCAGAAGCATGTGCC 239
Query 265 CAGTTTGAAGCAGTCGTGTTCTTCGGAAG-C-T-TCTACTGTTGATAACTCCTCTGCTGA 321
| ||||||||||||| ||||||| |||| | | |||||||||||||||||| || || |
Sbjct 240 AATTTTGAAGCAGTCGAGTTCTTCAGAAGTCTTCTCTACTGTTGATAACTCCCCTCCTAA 299
Query 322 TGTCAAAGTCTCAAAGCTATTTCAATCCTCAAGCCCAGTCTCAGTTCTTGAGAATACCAA 381
|||||||||||||||| | || ||||| | ||||||||||||||| || |||| |||||
Sbjct 300 TGTCAAAGTCTCAAAGTTGTTGCAATCTTTAAGCCCAGTCTCAGTCCTCAAGAACACCAA 359
Query 382 CGGTTCAGTCTCATCTCTAAACCTACACAGAGCTCTGAAACTGGCCTTTCCCGTGAAAGG 441
|||||| | |||| | | ||||| | || ||| || |||||||||||||| |||||||||
Sbjct 360 CGGTTCTGGCTCACCCCAAAACCCAAACGGAGATCAGAAACTGGCCTTTCTCGTGAAAGG 419
Query 442 CATAAGAAACAAGCGCAAACGCCCCACACTGCTGAGAGTTACATTCCTCCAGGCATTTGG 501
||| |||| ||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 420 CATCAGAAGCAAGCGCAAACGCCCCACACTACTGAGAGTTACATTCCTCAAATCATTTCT 479
Query 502 ATTTGAAATGTCTCAGCAGTTTGCTCCGGATGAATCAGAATCTGAAATTAACCTCTCTTC 561
||| || ||||| |||||||||||||| | | || ||||||| || |||||
Sbjct 480 ATTAGAGATGTCACAGCAGTTTGCTCC-G--G-AT--GAATCTG-----AA----TCTTC 524
Query 562 TGAGATATCCGCCAACAAGAAACGCAAGAAGAACAAGAGTCGTC 605
|||||| |||||| ||||||||||||||||||||||||||||
Sbjct 525 TGAGATTTCCGCCTTGAAGAAACGCAAGAAGAACAAGAGTCGTC 568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49380166501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5