BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933190
Length=2261
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28320.1 | Symbols: | Pleckstrin homology (PH) and lipid-bi... 3747 0.0
> AT2G28320.1 | Symbols: | Pleckstrin homology (PH) and lipid-binding
START domains-containing protein | chr2:12094746-12099644
FORWARD LENGTH=2849
Length=2849
Score = 3747 bits (2029), Expect = 0.0
Identities = 2183/2259 (97%), Gaps = 3/2259 (0%)
Strand=Plus/Plus
Query 1 TTCTAGGGCTTTGGTTTTGGAGTTGTAATGGCTTTTGGGTCTGAAAACGAGAGCGAAACG 60
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 389 TTCTAGGACTTTGGTTTTGGAGTTGTAATGGCTTTTGGGTCTGAAAATGAGAGCGAGACG 448
Query 61 AAGATGGAAGGTTGGTTGTATATAATTCGATCTAATCGATTTGGATTGCATTTCTCTAGA 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 449 AAGATGGAAGGTTGGTTGTATATAATACGATCTAATCGATTTGGATTGCATTTCTCTAGA 508
Query 121 AAACGTTACTTTGTTCTTAGAGATCATCTTCTCAAGAGTTTCAAGTCCATCTCCGATTCT 180
|||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 509 AAACGTTACTTTGTCCTTGGAGATCATCTTCTCAAGAGTTTCAAGTCTATCTCCGATTCT 568
Query 181 AAAACCAAGGATGCTGGAAGAAGTGCGGTGATAGATTCGTGTATTCGGGTTACTGACAAT 240
||||||||| |||||||| ||||||||||||||||||||||||| || ||||||||||||
Sbjct 569 AAAACCAAGAATGCTGGACGAAGTGCGGTGATAGATTCGTGTATCCGTGTTACTGACAAT 628
Query 241 GGGAGAGAAAATGTTCATAGAAAAGCATTCTTCATATTTACACTATACAATACCTCGAAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 629 GGGAGAGAAAATGTTCATAGAAAAGCATTCTTCATATTTACACTATACAATACATCAAAT 688
Query 301 CACAATGATCAGCTCAAGTTAGGAGCAAGCAGTCCTGAGGATGCAGCTAGGTGGATCAAT 360
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 689 CACAATGATCAGCTCAAGTTAGGAGCAAGCAGTCCTGAGGATGCAGCAAGGTGGATTAAT 748
Query 361 TTAATTAAGGAGGCGGCTTTAAAGGGTGCCCCTTTTCCAGGAGATGTTTTTAATTGTTCG 420
|| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 749 TTGATTAAAGAGGCGGCTTTAAAGGGTGCCCCTTTTCCTGGAGATGTTTTTAATTGTTCC 808
Query 421 AGGAGCCGATGGGACTCTTTGAGATTGAGTAGCTCAGTTCGGGACCATCACTCAAATTCT 480
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 809 AGGAGTCGATGGGACTCTTTGAGATTGAGTAGCTCAGTGCGGGACCATCACTCAAACTCT 868
Query 481 ATTGACTGGACACTTCGGTCGTCTGCACGAGTAGATCCTGTTACAACTGATGTTGTTGCG 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 869 ATTGACTGGACACTTCGGTCGTCTGCACGAGTTGATCCTGTTACAACTGATGTTGTTGCG 928
Query 541 CCTTCTCCGTGGACAATATTCGGTTGTCAAAATGGTCTTCGGCTTTTCAAAGAGGCAAAA 600
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 929 CCTTCTCCCTGGACAATATTCGGTTGTCAGAATGGTCTTCGGCTTTTTAAAGAGGCAAAA 988
Query 601 GAGAGAGATTCTCTTGGAAGGTGGGATGATCATCCGGCTATTATGGCTGTTGGTGTTGTT 660
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 GAGAGAGATTCTCTCGGAAGGTGGGATGATCATCCGGCTATTATGGCTGTTGGTGTTGTT 1048
Query 661 GATGGAACTTCAGAAACCATTTTCCAAACTCTTCTTTCTCTTGGACCCTCAAGATCAGAA 720
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1049 GATGGAACCTCAGAAACTATTTTCCAAACGCTTCTTTCTCTTGGACCCTCAAGATCAGAA 1108
Query 721 TGGGATTTCTGTTTCTACCAAGGCAGTGTGGTCGAACATCTTGATGGTCACACTGATATA 780
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 TGGGATTTCTGTTTTTATCAAGGCAGTGTGGTCGAACATCTTGATGGTCACACTGATATA 1168
Query 781 ATTCACAAACAGCTATACAGCGACTGGTTACCTTGGGGGATGAAGAGAAGAGATTTTTCG 840
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1169 ATCCACAAACAGCTATACAGCGATTGGTTACCTTGGGGGATGAAGAGAAGAGATTTTTCG 1228
Query 841 CTGCGGCGTTACTGGAGAAGGGAAGATGATGGCACATATGTTATTCTTTATCATTCTGTA 900
|| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1229 CTACGGCGTTACTGGAGAAGGGAAGACGATGGCACATATGTTATTCTCTATCATTCTGTA 1288
Query 901 TTTCACAAGAAGTGTCCACCTCAGAAAGGCTATGTCCGTGCGTGCCTTAAAAGTGGCGGT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 TTTCACAAGAAGTGTCCACCTCAGAAAGGCTATGTCCGTGCGTGCCTTAAAAGTGGCGGT 1348
Query 961 TATGTGATTTCTCCCATAGACAACGGAAAACAATCAGTTGTGAAGCACATGCTTGCTGTT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 TATGTGATTTCTCCCATAGACAACGGAAAACAATCAGTTGTGAAGCACATGCTTGCTGTT 1408
Query 1021 GATTGGAAGTCCTGGAGATCTTATGTAAAACCATCCCTAGCTAGATCTATTACCGTGAAA 1080
|||||||||||||||||||||||||| || || ||| |||||||||||||||||||||||
Sbjct 1409 GATTGGAAGTCCTGGAGATCTTATGTGAAGCCGTCCTTAGCTAGATCTATTACCGTGAAA 1468
Query 1081 ATGCTTGGAAGAATTTCTGCCCTGAGAGAGCTTTTCAGGGCAAAGCATGGAAGCTTTCCT 1140
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1469 ATGCTTGGAAGAATTTCTGCCCTGAGAGAGCTTTTTAGGGCAAAGCACGGAAGCTTTCCT 1528
Query 1141 CCTAATCTGTCGTCAGGGGAGTTGTCAAGAAGTGCAAGATTGACTCAGAACGAAGATGGT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1529 CCTAATCTGTCGTCAGGGGAGTTGTCAAGAAGTGCAAGATTGACTCAGAACGAAGATGGT 1588
Query 1201 GTGTTTGGTGATTCTTCCCTGAGGGAAAGCGAAATGTTTAAGGACACTGCAAATGAAGAG 1260
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1589 GTGTTTGGTGATTCTTCCCTGAGGGAAAACGAAATGTTTAAGGACACTGCAAATGAAGAG 1648
Query 1261 AGAGACAAATTTCCCTCAGAGCGCTCTAGCCTTGTAGACTTGGATGAGTTTTTCGACGTA 1320
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1649 AGAGACAAATTTCCCTCAGAGCGCTCTAGCCTTGTAGACTTGGATGAGTTTTTCGACGTT 1708
Query 1321 CCAGAACCATCAGATAATGACCATTTGGATGACAGCTGGACCTCAGATTTTGATTTGGAT 1380
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1709 CCAGAACCATCAGATAATGACAATTTGGATGACAGCTGGACCTCAGATTTTGATTTGGAT 1768
Query 1381 ACATGCTGTCAGGAATCCCGCCAGCCAAAACTAAATAGCGCTACGAGTTTGGTGAAAAAA 1440
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1769 ACATGCTGTCAGGAATCCCGCCAGCCAAAACTAAATAGCGCTACGAGCTTAGTGAAAAAA 1828
Query 1441 TTACACGATCTTGCAGTTCAAAAGAGGGGTTACGTTGACCTGCATGAGAGGGCGAGGGAT 1500
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1829 TTACACGATCTTGCAGTTCAAAAGAGGGGTTATGTTGACCTGCATGAGAGGGCGAAGGAA 1888
Query 1501 GAGAGTAGCCCACACGC-AGCCCGCAGCCCGCCTTGCTGCTATGGAACCACGCTTCCAAC 1559
||||| |||||||| || | || ||| |||||||||||||||||||||||||||||||||
Sbjct 1889 GAGAGCAGCCCACATGCTA-CCTGCAACCCGCCTTGCTGCTATGGAACCACGCTTCCAAC 1947
Query 1560 TGATCCTAGTTGTGATTTGCCTTGTAGTTGGACAACAACTGACCCATCTACTTTTCTTAT 1619
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1948 TGATCCTAGTTGTGATTTGCCTTGTAGTTGGACAACAACGGACCCATCTACTTTTCTCAT 2007
Query 1620 TCGAGGAAAAACCTATCTTGATGACCAGAAGAAGGTCAAGGCAAAGGGTACACTGATGGA 1679
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2008 TCGAGGAAAAACTTATCTTGATGACCAGAAGAAGGTCAAGGCAAAGGGTACACTGATGGA 2067
Query 1680 AATGGTAGCTGCAGACTGGCTAAAATCTGACAAGCGGGAAGATGATTTGGGGTCCCGACC 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2068 AATGGTAGCTGCAGACTGGCTAAAATCTGACAAGCGGGAAGATGATTTGGGGTCCCGTCC 2127
Query 1740 AGGAGGCATAGTTCAGAAATATGCAGCAAAAGGTGGACCAGAGTTCTTTTTCATCGTGAA 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2128 AGGAGGCATAGTTCAGAAATATGCAGCAAAAGGTGGACCAGAGTTCTTTTTCATCGTGAA 2187
Query 1800 TATACAGGTTCCTGGATCAACAACGTACAGCCTTGTGCTTTATTACATGATGAGCACTCC 1859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2188 TATACAGGTTCCTGGATCAACAACGTACAGCCTTGTGCTTTATTACATGATGAGCACTCC 2247
Query 1860 CATTGAAGAGCATCCTTTGCTAGTTAGCTTTGTTAATGGTGATGACGCATATAGGAATTC 1919
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2248 TATTGAAGAGCATCCTTTGCTAGTTAGCTTTGTTAATGGTGATGACGCATATAGGAATTC 2307
Query 1920 AAGGTTCAAGCTCATTCCCTACATATCCAAGGGCTCTTGGATAGTTAAGCAGAGTGTGGG 1979
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2308 AAGGTTCAAGCTCATTCCCTACATATCCAAGGGCTCTTGGATAGTTAAGCAAAGTGTGGG 2367
Query 1980 AAAGAAAGCATGCCTTATTGGTCAAGCCCTGGAGATCAATTACTTCAGGGGAAAGAACTA 2039
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2368 AAAGAAAGCATGCCTTATTGGTCAAGCCCTGGAGATCAACTACTTCAGGGGAAAGAACTA 2427
Query 2040 TATTGAGCTGGGCGTTGATATTGGGTCATCAACGGTTGCAAGAGGAGTTGTGAGTCTTGT 2099
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2428 TATTGAGCTGGGCGTTGATATTGGGTCATCAACTGTTGCAAGAGGAGTTGTGAGTCTTGT 2487
Query 2100 TCTTGGTTACCTCAACAAACTTGTGATTGAAATGGCATTCTTGGTACAGGCGAATACCGA 2159
||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 2488 TCTTGGTTACCTCAACAAACTCGTGATTGAAATGGCCTTCTTAATACAGGCGAATACCGA 2547
Query 2160 AGAGGAGCTCCCAGAATATCTTCTTGGAACCTGTCGGTTTAACCATTTAGACGCTTCCAA 2219
|||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||
Sbjct 2548 AGAGGAGCTCCCAGAATATCTTCTTGGAACATGTCGGTTTAACCATCTCGACGCTTCCAA 2607
Query 2220 GGCAGTTTCAATTATTCCATAAAAGACCAAAGCAAAGAT 2258
||| ||||||||||||||| ||||||||| ||||||||
Sbjct 2608 AGCAATTTCAATTATTCCATGAAAGACCAA-GCAAAGAT 2645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112198218075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5