BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933191

Length=635
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G41440.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   121    1e-26


> AT2G41440.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G41470.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr2:17271172-17274370 FORWARD LENGTH=1709
Length=1709

 Score =  121 bits (65),  Expect = 1e-26
 Identities = 183/235 (78%), Gaps = 27/235 (11%)
 Strand=Plus/Plus

Query  29   GAAGAAGACGAGAGTTCCCTGCAATTTCTGCGAATTCTCCAGCAGCAGATACGGAT----  84
            ||| ||||||||||  ||||||||||||||||||||||||||||||||||| ||||    
Sbjct  582  GAACAAGACGAGAGGGCCCTGCAATTTCTGCGAATTCTCCAGCAGCAGATATGGATGCAG  641

Query  85   -T-TGACCA-AAGTCTACAGGATCAAGACAAGGAAGAAACAGTGCTGCGGAAAGAAGTC-  140
             | |||  | ||| || ||||| |||||||| ||||   |||||||||||||||||||| 
Sbjct  642  CTCTGAAGATAAG-CTGCAGGAGCAAGACAATGAAG---CAGTGCTGCGGAAAGAAGTCG  697

Query  141  ATGAGATTACGATCCCT-GATCAGGAGGATGACTGGTAGAG-ACGACGAT-G-CGAGCTT  196
            | |||||||||  |  | ||||| ||| |||||||| | || | ||  || | | |||||
Sbjct  698  A-GAGATTACGG-CTTTTGATCAAGAGAATGACTGGGA-AGGAAGAT-ATTGTC-AGCTT  752

Query  197  CACTGAGCTGCAAGAACTTACAA-GTCATCTCGA-GAATGTCC-AGCGCATTGTG  248
            ||| ||||||| ||  ||| ||| |||| ||  | | |||||| | | |||||||
Sbjct  753  CACCGAGCTGCTAGCTCTT-CAAAGTCACCTT-ATGGATGTCCGATC-CATTGTG  804



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30642829670


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5