BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933215
Length=1676
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28150.1 | Symbols: | Domain of unknown function (DUF966) |... 2294 0.0
> AT2G28150.1 | Symbols: | Domain of unknown function (DUF966)
| chr2:11999836-12002499 FORWARD LENGTH=2074
Length=2074
Score = 2294 bits (1242), Expect = 0.0
Identities = 1539/1673 (92%), Gaps = 57/1673 (3%)
Strand=Plus/Plus
Query 9 CGAGATAAAAACATGGAAGCAAGGATGAAGAAGTATAGCAGAGAAGTGAGTCCAGAGAGA 68
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 168 CGAGATAAAAACATGGAAGCGAGGATGAAGAAGTATAGCAGAGAAGTGAGTCCAGAGAGA 227
Query 69 GCAAAAGTCTGGACTGAGAAATCACCAAAGTATCATCAAAAGATTAAGAAAGTTCAAATT 128
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 228 GCAAAAGTCTGGACTGAGAAATCACCAAAGTATCATCAAAAGATCAAGAAAGTTCAAATT 287
Query 129 GTTTATTACCTCTCCAAGAATCGTCAACTCGAGCATCCTCATTTCATGGAAGTGTTGATT 188
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 288 GTTTATTACCTCTCCAAGAATCGTCAACTTGAGCATCCTCATTTCATGGAAGTGTTGATT 347
Query 189 TCTTCTCCAAATGGTTTATACTTAAGAGATGTTACAGAGAGGCTTAATGTTCTTAGAGGT 248
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 348 TCTTCTCCAAATGGTTTATACCTAAGAGATGTTATAGAGAGGCTTAATGTTCTTAGAGGT 407
Query 249 AGAGGAATGGCTTCAATGTATTCTTGGTCTAGTAAGAGAAGCTATAGGAATGGTTTTGTT 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 AGAGGAATGGCTTCAATGTATTCTTGGTCTAGTAAGAGAAGCTATAGGAATGGTTTTGTT 467
Query 309 TGGCATGATTTATCAGAAGATGACTTGATTTTACCAGCTAATGGGAATGAGTATGTTCTC 368
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 468 TGGCATGATTTATCAGAAGATGATTTGATTTTACCAGCTAATGGGAATGAGTATGTTCTT 527
Query 369 AAAGGTTCTGAGCTATTTGATGAATCCAATTCAGATCACTTTAGTCCAATTATGAACTTA 428
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct 528 AAAGGTTCTGAGCTATTTGATGAATCCAATTCAGATCACTTTAGCCCAATTGTGAATTTA 587
Query 429 GCGAGTCAAAACATGAAGCAAATAGTTGTCGAGCCACCATCATCTAGAAGTATGGATGAT 488
|| | ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 588 GCTACTCAAAACATGAAGCAGATAGTTGTGGAGCCACCATCATCTAGAAGTATGGATGAT 647
Query 489 TCGTCTTCGTCTTCGAGTATGAATAATGGGAAGGGAACTAATAAGCATTCTCAAGAAGAT 548
|||||||| |||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 648 TCGTCTTCATCTTCGAGTATGAATAATGGTAAAGGAACTAATAAGCATTCTCATGAAGAT 707
Query 549 GATGAGCTTTCTCCACCAGCTGTTCGCTCTGTTTCCTCGTCTGGTGTATCGCCTGATTCT 608
|||||||||||||| |||||| ||||||||||||| || || |||||||| |||||||||
Sbjct 708 GATGAGCTTTCTCCTCCAGCTCTTCGCTCTGTTTCATCTTCCGGTGTATCTCCTGATTCT 767
Query 609 AGAGACGCGAAGAACTCGTCTTCTTGGTGTTTGGCTGAGTACAAAGTTTATAAGAGCGAG 668
||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 768 CGAGACGCTAAGAACTCATCTTCCTGGTGTTTGGCTGAGTACAAAGTGTATAAGAGCGAG 827
Query 669 GGGCTCGCAGATGCGTCTACTCAAACCGATGAAACTGTGAGTGGTTGTTCTAAAAAACCT 728
|| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 828 GGACTCGCAGATGCTTCTACTCAAACCGATGAAACTGTGAGTGGTCGTTCTAAAACACCT 887
Query 729 ATAGAGACCTTCAGTAGAGGTGTTTCAACTGATGAAGATGGGTCATCAGAACCTGAAACC 788
|||||||| || ||||||||||| |||||||||||||||| ||||||||| |||||||||
Sbjct 888 ATAGAGACTTTTAGTAGAGGTGTATCAACTGATGAAGATGTGTCATCAGAGCCTGAAACC 947
Query 789 AGCGAAAATAATATCGTGAGTGAGGCTTCGTGTGCGGGGAAGGAGAGGGAGAGTGCGGAA 848
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 AGCGAGAATAACCTCGTGAGTGAGGCTTCGTGTGCGGGGAAGGAGAGGGAGAGTGCGGAA 1007
Query 849 ATATCAAGAAACTCTGTCTCACCGCCTTTTTCCAATAGTGCTTCTTCGCTAGGTGCAAAG 908
|||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||
Sbjct 1008 ATATCAAGAAACTCTGTCTCGCCGCCTTTTTCCAATAGTGCTTCTTCGCTAGGAGGAAAG 1067
Query 909 ACTGATACATTGGAGTCTCTAATAAGAGCTGATGTTAGTAAAATGAATAGTTTTAGGATT 968
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1068 ACTGATACTTTGGAGTCTCTAATAAGAGCTGATGTTAGTAAGATGAATAGTTTTAGGATT 1127
Query 969 CTTGAACAAGAAGATGTTCGAATGCCCGCTAATCCGAGGCTTAGGGCCTCGAATATGCTG 1028
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1128 CTTGAACAAGAAGATGTTCGAATGCCCGCTATTCCGAGGCTTAGGGCCTCGAATATGCTG 1187
Query 1029 ATGCAGTTGATATCTTGTGGTTCAATATCAGTCAAGGATAACAATTTCGGCCTTGTCCCA 1088
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1188 ATGCAGTTGATATCTTGTGGTTCAATATCAGTCAAGGATAACAATTTCGGCCTTGTACCT 1247
Query 1089 ACTTACAAACCGAAATTTGGCCACTCGAAGTTTCCGTCTCCGTTTTTCTCCTCGTCGTTT 1148
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1248 ACTTACAAACCGAAATTTGGACACTCGAAGTTTCCGTCTCCTTTTTTCTCCTCGTCGTTT 1307
Query 1149 ATGATGGGAGATCTTGACCGTTTATCGGAAACTCCGAGTCTAATGGGTATGAG-ATTGGA 1207
||||||||||||||||||||||| ||||||||||||||||||||||| |||| || |||
Sbjct 1308 ATGATGGGAGATCTTGACCGTTTGTCGGAAACTCCGAGTCTAATGGGCCTGAGGAT-GGA 1366
Query 1208 GGAGAAAGAGTATTTTAGTGGGAGCTTAGTCGAGACGAAGCTACAGAAGAAGGATGCAGC 1267
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1367 GGAGAAAGAGTATTTTAGTGGGAGCTTAGTGGAGACTAAGCTACAGAAGAAGGATGCAGC 1426
Query 1268 AGA-AGCTAATGATGCTTCACTTAAGCGTTCTTCATCCTACAATGGTGACAGGGCATCCA 1326
|| || ||| | |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 GGATAG-TAACG---CTTCTCTTAAGCGTTCTTCATCCTACAATGGTGACAGGGCATCCA 1482
Query 1327 ACCAAATGGGTGTAGCAGAAAATGGAGACTCAAAACCGGGTAGTTCGAAATACAATCCAA 1386
||||||||||||||||||| ||||||||||||||||||| |||||| ||| | |||||||
Sbjct 1483 ACCAAATGGGTGTAGCAGAGAATGGAGACTCAAAACCGGATAGTTCTAAAAATAATCCAA 1542
Query 1387 GCTCGGGAAAGGCATCGTCTATAT-TAGGCAAGCAACAGCCACGTAGCGAGTCCATGAGA 1445
|||| ||||||| || ||||| | |||| |||||||| |||| | | |
Sbjct 1543 GCTCAAGAAAGGCGTCTTCTAT-TCTAGGGAAGCAACAACCAC-T------T----G--- 1587
Query 1446 TCTCCTGTCTCAGAAAAGAAAAGAGACTCATCAGAAGATACTACCAAGAACATTCCATGT 1505
||||| | | ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 TCTCC-G----A-AAA-GAGAAGAGACTCATCAGAAGATACTACCAAGAACATTCCATGT 1640
Query 1506 -CC-C-A---C---T-A-------A--AA--GAATAACCGAATCTTCGAGGAAGCCCGAT 1544
|| | | | | | | || |||||||||| |||| ||||||||||||
Sbjct 1641 ACCACTAAAACACATGATGCTTGCAGTAAAAGAATAACCGAGTCTTTAAGGAAGCCCGAT 1700
Query 1545 TCATTCAGAGAAGACGAGGAGAAAGTTATTAAGATCGACGAAAGGCTTGCTTCAGGAGCA 1604
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1701 TCATTCAGAGAAGACGAGGAGAGAGTTATCAAGATCGACGAAAGGCTTGCTTCAGGAGCA 1760
Query 1605 CGAGTTAGAATCGAATCGAAAGCACTAGTGCCTTCAGAGGAGCCTTAACCAAG 1657
|||||||||||||||||||||| | | |||||||| ||||||||||||||
Sbjct 1761 CGAGTTAGAATCGAATCGAAAG---T-G--CCTTCAGAAGAGCCTTAACCAAG 1807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82830899250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5