BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933228
Length=1498
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28050.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1921 0.0
> AT2G28050.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr2:11938265-11939653 REVERSE LENGTH=1389
Length=1389
Score = 1921 bits (1040), Expect = 0.0
Identities = 1279/1395 (92%), Gaps = 13/1395 (1%)
Strand=Plus/Plus
Query 27 ATGACTCTGCAAAGCTTCTTGAAAACCCTAAAGACAGCTAAACAAACTTATCCATTCTCA 86
||||||| |||| |||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1 ATGACTCCGCAATGCTTCTTGAAAACCCTGAAGACAGCTAAACAAACTTATACATTCTCA 60
Query 87 ATCTACAAGCTCCTCCTCAATTCTTCCTCTATAAACCAAACTCTTGATTCACCGGAAA-A 145
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 61 ATCTACAAGCTTCTCCTCAATTCTTCCTCTATAAACCAAACTCTTGCTTCACCGGAAACA 120
Query 146 GCCACTCTCCGATCTCAATCTCTCCAC-CTTCCGCCGTATTTTATCAGACCCAGATATCA 204
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 121 -CCACTCTCCGATCTCAATCTCTCCACTCTT-CGCCGTATTTTATCAGACCCAGATATCA 178
Query 205 AATCATGGAAATGCATCTCCCTCTTCAATTTCATCTTCGAAAACCCATCTCTTTTCTCAT 264
|||| ||||||||||||||||| |||||||||||| | || |||||||||||||||||||
Sbjct 179 AATCCTGGAAATGCATCTCCCTTTTCAATTTCATCCTGGAGAACCCATCTCTTTTCTCAT 238
Query 265 TCCAACCTGATCTCAGAACTCACTTGTCTCTCACTTCCCGTGTTTTGTCGGAGAGGAGAT 324
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 239 TCCAACCTGATCTCAGAACTCACTTGTCTCTCACTTTCCGTGTCTTGTCGGAGAGGAGAT 298
Query 325 TCTCAGATGCGAAAGAACTCTTGAAACTTGTGGCTATTGACGACATTCTCAGGTACCCTT 384
||||| ||||||||||||||||||| | |||||||||||| |||||||||||||||||||
Sbjct 299 TCTCATATGCGAAAGAACTCTTGAAGCCTGTGGCTATTGATGACATTCTCAGGTACCCTT 358
Query 385 TTAAAGTAATCGTCTCTAGCTTTGTTGATGAGTGTGGTTGTGAGACGAGAGTTGTTGCTA 444
|||| ||||||||||||||| || ||||||| ||||||||||||| || |||||||| |
Sbjct 359 TTAATGTAATCGTCTCTAGCGTTATTGATGAATGTGGTTGTGAGAAGAAAGTTGTTGGGA 418
Query 445 GGTTCTTTAATTCGATGCTTATGGTTTATTCAGACAATGGAAAGTTT-GATGAAGTTGTT 503
||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||
Sbjct 419 GGTTCTTTAATTCGATGATTATGGTTTATTCAGACAATGGAAAATTTAG-TGAAGTTGTT 477
Query 504 GAGGTTTTTGAGTATATGAAGAACAATGAGGTTAAGATTGATGAAAAGGCATGTACTTTG 563
||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||
Sbjct 478 GAGGTTTTTGAGTATATGAAGAACAATGAAGTTAAGATTGATGAAAAGACTTGTACTTTG 537
Query 564 CATCTGTTGAATCTCAAGAAATGTGATCAGATGGAATTAGCTAGAGATTTCTTTCGTTTA 623
||| ||||||||||||||| |||||||||||||||| ||||||||||||||||| || ||
Sbjct 538 CATTTGTTGAATCTCAAGAGATGTGATCAGATGGAACTAGCTAGAGATTTCTTTAGTCTA 597
Query 624 ATGGTTGAGTCAGGGCTAGATGTTGT-ATCTGTGTACTCTTTGACGGTTGTTGTTACCGC 682
||||||||||||||| | |||||||| | ||||||||||||| || ||||||||||| |
Sbjct 598 ATGGTTGAGTCAGGGATTGATGTTGTTA-CTGTGTACTCTTTAACTGTTGTTGTTACGGT 656
Query 683 GTTGTGTTGCAATGGAGAGATCACGAGAGGAAGAGAATTGGTGGAGGAGATGCTTTTGGT 742
||||||||||||||| ||||| || |||| |||||||||||||||||||||| |||||
Sbjct 657 GTTGTGTTGCAATGGGGAGATTACAAGAGCAAGAGAATTGGTGGAGGAGATGGGGTTGGT 716
Query 743 TAAAGGGATCAAGCCTAATATTGTTACGTTTAAGTCGATGATAGATTGTTGTGTCAAAAG 802
||||||| | ||| |||||||||||||||||||||||||||| | ||||||||| |||||
Sbjct 717 TAAAGGGGTTAAGGCTAATATTGTTACGTTTAAGTCGATGATTGGTTGTTGTGTGAAAAG 776
Query 803 ATGGGATTTTGAAGAGTTGGATTTGATT-TTAAAGTTAATGGAGAAGGAAAGTGTGATGC 861
||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||
Sbjct 777 ATGGGATTTTGAAGAGTTGGATTTGGTTCTTAA-GTTAATGGAGAAGGAAAGTGTGATGC 835
Query 862 TTGATCTTGATAGTTACAAGGTTTTGATTGATGGGTTTACTAGTTATGGTAAGCTTGAAG 921
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 836 TTGATCTCGATAGTTACAAGGTTTTGATTGATGGGTTTACTAGTTATGGTAAGGTTGAAG 895
Query 922 AAGCAGAGAGGTTGGTTTCGACT-ATGCATGATAAGAAGTTAAGAGTGGAGACTTATCTG 980
|||||||||||||||||| || | |||||||||||||||||||||||||||| |||||||
Sbjct 896 AAGCAGAGAGGTTGGTTTTGA-TGATGCATGATAAGAAGTTAAGAGTGGAGAGTTATCTG 954
Query 981 TATAATTTGATCATGAATGGGTATTGTCGGTTCGGACTAGTGGAGAAAGCGTTTGAACTA 1040
||||||||||| ||||||||||| | |||||| |||||||||||||||| | ||||||||
Sbjct 955 TATAATTTGATTATGAATGGGTACTCTCGGTTTGGACTAGTGGAGAAAGTGATTGAACTA 1014
Query 1041 CACAGCGAAATGAGTTCTCGAGGTGTTACTCCCAATAAGGATACGTATTGGGTGTTGATG 1100
| ||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 1015 TATAGCGAAATGAGTTCTCGAGGTGTTACTCCGAACAAAGATACGTATTGGGTGTTGATG 1074
Query 1101 AATGGACTTTGTAAAGCTGGGAAAGTGTGTGAAGCGATTAGTTTGTTGAACGAGTTGCGA 1160
||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||
Sbjct 1075 AATGGACTTTGCAAAGCTGGGAAAGTTTGTGAAGCGATGAGTTTTTTGAATGAGTTGCGA 1134
Query 1161 GTAAATGAGTTTGAGATTGATGAAGAAATGTATATTGCATTGACTGAAGGGTGTTACAGA 1220
|| ||||||||||||||||||||||||||||||| | |||||| ||||| ||||||||||
Sbjct 1135 GTGAATGAGTTTGAGATTGATGAAGAAATGTATAGTACATTGAGTGAAGAGTGTTACAGA 1194
Query 1221 GTAGGAATGATAGATAAATCTTTAGAAGTGGTGGCTGAGATGATTCGGGAAGGATTCATT 1280
||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||
Sbjct 1195 GTAGGAATGATAGATAAATCTTTGGAAGTGGTGGCTGAGATGATTAGGGATGGATTCATT 1254
Query 1281 CCCGACGCTACGATATGTGAAAGATTAGCTGATGCATTGTTTGAAGTAAACCGGAAAGAG 1340
|| | ||||||||||||||||||||||||||| | ||||||||||||||| ||||||||
Sbjct 1255 CCTGGTGCTACGATATGTGAAAGATTAGCTGATTCGTTGTTTGAAGTAAACAGGAAAGAG 1314
Query 1341 GCACAAATGATGGTTACT-TTGTAGTTAAGAGTGGCGTCAAACCGAAATCTTTTTCTGAA 1399
||||||||| || |||| |||| |||||| |||| | ||||| ||||| | |||| ||
Sbjct 1315 GCACAAATGCTGATTACCATTGTGGTTAAGTGTGGTATTAAACCAAAATCGTGTTCTCAA 1374
Query 1400 TTTGGTCCGAAATGA 1414
| ||||| |||||||
Sbjct 1375 TATGGTCTGAAATGA 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73895202240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5