BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933236

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G27970.1 | Symbols: CKS2 | CDK-subunit 2 | chr2:11912212-119...   453    4e-127


> AT2G27970.1 | Symbols: CKS2 | CDK-subunit 2 | chr2:11912212-11913297 
REVERSE LENGTH=573
Length=573

 Score =  453 bits (245),  Expect = 4e-127
 Identities = 277/292 (95%), Gaps = 3/292 (1%)
 Strand=Plus/Plus

Query  8    TGGGTGATATAAGAAGATGGGTCAGATCCAGTACTCAGACAAATATTTCGATGATACTTT  67
            |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  58   TGGGTGATTTAAGAAGATGGGTCAGATCCAGTACTCCGACAAATATTTCGATGATACTTT  117

Query  68   TGAATACAGGCACGTCGTACTTCCTCCGGAAGTTGCTAAGCTTTTACCGAAGAATCGAAT  127
             |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct  118  CGAATACAGGCACGTTGTACTTCCTCCGGAAGTTGCTAAGCTTTTACCTAAGAATCGTAT  177

Query  128  TCTCTCCGAAAGTGAATGGAGAGCTATAGGAGTGCAACAAAGTCGTGGATGGGTTCATTA  187
            ||| || ||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct  178  TCTTTCGGAAAGTGAATGGAGAGCCATCGGAGTGCAGCAAAGTCGTGGATGGGTTCATTA  237

Query  188  CGCGATTCATCGTCCTGAGCCACATATCATGCTCTTTAGGAGGCCTCTTAACTACCAGCA  247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238  CGCGATTCATCGTCCTGAGCCACATATCATGCTCTTTAGGAGGCCTCTTAACTACCAGCA  297

Query  248  GGAGCACCAAGCTCAGATTGCGAAGTAGAA---TTATGCAAAATTCTCCCTA  296
            ||||||||||||||||||||| ||||||||   |||||||||||||||||||
Sbjct  298  GGAGCACCAAGCTCAGATTGCTAAGTAGAAGAATTATGCAAAATTCTCCCTA  349



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13672827728


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5