BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933239
Length=2565
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27950.1 | Symbols: | Ring/U-Box superfamily protein | chr2... 3720 0.0
> AT2G27950.1 | Symbols: | Ring/U-Box superfamily protein | chr2:11899205-11904007
REVERSE LENGTH=3144
Length=3144
Score = 3720 bits (2014), Expect = 0.0
Identities = 2400/2580 (93%), Gaps = 51/2580 (2%)
Strand=Plus/Plus
Query 7 GTTAAAGATTGATCAAATGGCTATTGCTGGTCTGCAAAATATTTTGGCGATCGATTCCTC 66
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct 392 GTTAAAGATTGATCAAATGGCTATCGCTGGTCTGCAAAATATTTTGGTGATCGATTCATC 451
Query 67 TTTCCGTCGGGACTCTGAGGTTC-GGCCATCTAGACAGAGGGAAAATGAAGGAAGGCCAA 125
||||||||||||||||||||||| ||| | ||||||| ||||||||||| |||||| |||
Sbjct 452 TTTCCGTCGGGACTCTGAGGTTCAGGCGA-CTAGACAAAGGGAAAATGAGGGAAGGTCAA 510
Query 126 GCGTCCGGGCATCCTCACTCCTACAGATGTGGAGGGAACTTGAGGATGATCACGTGATGG 185
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 511 GCGTCCGGGCATCCTCACTCCTACAGATGTGGAGGGAACTTGAGGATGATCATGTGATGG 570
Query 186 GTCATGCTCGT----GAGA----G-GAGGA-GCG-G-TTCTTCTCCTTCTAGTGCTTTGA 233
||||||||||| |||| | ||||| | | | |||||| || |||| | || |||
Sbjct 571 GTCATGCTCGTGAGAGAGATGGTGAGAGGAGGAGTGTTTCTTCACCATCTAATACTATGA 630
Query 234 GGGGAAATGGTTGTGACAGTAATATTAGTGCACATGATATTGTTAGAGATAGTGTAAATC 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 631 GGGGAAATGGTTGTGACAGTAATATTAGTGCACATGATATTGTTAGAGATAGTGTTAATC 690
Query 294 TGGGTGAGAATGAACTTGGTGGATGGTCTCCCACCCAGAGTCATGTTGGGTCACATAACT 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 TGGGTGAGAATGAACTTGGTGGATGGTCTCCCACCCAGAGTCATGTTGGGTCACATAACT 750
Query 354 CGAGTGAGGATCTCGGCCCTTTTCATAGCGAGCATTTTTCTGATCTGGGGATGGGTGAAA 413
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 751 CGAGTGAGGATCTCGGCCCTTTTCAGAGCGAGCATTTTTCTGATCTGGGGATGGGTGAAA 810
Query 414 GGGAAAGAGTTAGACAAATTTTTCGTGAGTGGACGAGCTCTGGGACAGGTCAGCATACTG 473
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 GGGAAAGAGTTAGACAGATTTTTCGTGAGTGGACGAGCTCTGGGACAGGTCAGCATACTG 870
Query 474 ATTCTGCTTCCCACGCAACCAACAGCTCAAGAGCAGAATGGCTTGGTGAAACTGAACAGG 533
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 871 ATTCTGCTTCCCAAGCAACCAACAGCTCAAGAGCAGAATGGCTTGGTGAAACTGAACAAG 930
Query 534 AAAGGGTGAGGATCATAAGGGAGATGGTTCAGATGAATAGCCAGCAGAGGCCTGCTCTTG 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 AAAGGGTGAGGATCATAAGGGAGATGGTTCAGATGAATAGCCAGCAGAGGCCTGCTCTTG 990
Query 594 GTGATCAAAGGGAAGAACAACCTATTGAAGGTACTAATCAGATTGAAAGAGTACTTGATG 653
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 991 GTGATCTCAGGGAAGAACAACCTATTGAAGGTGCTAATCAGATTGAAAGAGTACTTGATG 1050
Query 654 G-ACAGGTTGAAAATGCAAACTGCATCCAGAATGAACATGCTAGAAGAGGCATACGCAAG 712
| | | |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1051 GAATA-GTTGTTAATCCAAACAGCATCCAGAATGAACATGCTAGAAGAGGCATACGCAAG 1109
Query 713 TTGTGTGGTAGGCAAGTGTGGGTAGATATGTTAAAAATGGCTGAGA-GAGAAAGGCAAAG 771
||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||
Sbjct 1110 TTGTGTGGTAGGCAAGTGTGGGTGGATATGTTAAAAATGGCTGAGATG-GAAAGGCAAAG 1168
Query 772 AGAGCTGGAGGGTTTGATGCAGCATCATGCTGTATCAAACTTCGCTCATCGTAACCGCAT 831
|||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1169 AGAGCTGGAGGGATTGATGCAGCATCATGCAGTATCAAACTTCGCTCATCGCAACCGCAT 1228
Query 832 TCAGGCATTGCTAAGGGGGAGATTCTTGCGAAATGGGGACAACGATGATAAAGAGAAACC 891
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1229 TCAGGCATTGCTAAGGGGGAGATTCTTGCGAAATGGTGACAACGATGATAAAGAGAAACC 1288
Query 892 AACATCATCCGCAGCTACTGAGTTGGGCTTTCTAAGAGAGAGGCACACTGTATCTGAGCT 951
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 AACATCATCTGCAGCCACTGAGTTGGGCTTTCTAAGAGAGAGGCACACTGTATCTGAGCT 1348
Query 952 GAGGGAGGAGTTTATATCTAGATTGGACCGGTCTGTCTCTGGTCAAGCGAGCAGTAGTCA 1011
||||||||| |||||||| ||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1349 GAGGGAGGAATTTATATCCAGACTGGACCGGTCTGCCTCTGGTCAAGCGAGCAGTAGTCA 1408
Query 1012 TTCTGAGACCTCATCAAATGCTGAAACCGATGATATTAGAGGTGAACAAAACGAACTGAA 1071
|||||||||||||||||||||||||| ||| ||| |||||||||||||||||| |||||
Sbjct 1409 CTCTGAGACCTCATCAAATGCTGAAACTGATCATAATAGAGGTGAACAAAACGACCTGAA 1468
Query 1072 TTGTCTCGATAGCATCAATGGTGCAGACGGTGGTTCAGGTCAAAATGGCAGAGAGGCTGA 1131
|||||| ||||||||||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct 1469 TTGTCTAGATAGCATCAATGATGCAGACGGTGGTTCAGATCAAAATGGCCGAGAGGCTGA 1528
Query 1132 CAACCAAATTTCGCTGGATGAGATAACTAATTCTGAACACTTTTATAATCGGAGCACAAG 1191
|||||||| ||| ||||||||||||||||| |||| || | || || |||||||||||
Sbjct 1529 CAACCAAAGTTCACTGGATGAGATAACTAACTCTGGACGGTGTTGTAGCCGGAGCACAAG 1588
Query 1192 TTTGGAGGAAAGGACTGCACGTGTAGAAGGCTGGCAACGGTCAGAAATTGATGATTTTTC 1251
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1589 TTTGGAAGAAAGGACTGCACGTGTAGAAGGCTGGCAACGGTCAGAAATTGATGATTTTTC 1648
Query 1252 TCAAAGAAGAAATGATGCTGAAGTGGACATGAATAGCCATCAAAGAGAGGATGCTACTGG 1311
|||||||||||||||| | ||||| | | | || | || ||||||||||
Sbjct 1649 TCAAAGAAGAAATGATACGGAAGT-G----G---A-CC-T------GA--ATGCTACTGG 1690
Query 1312 GTGTTCATCCTCTTCAATTCATGGAGACAAGATCAGATACGGCTGTCAATTACGAGGACC 1371
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| | |
Sbjct 1691 GTGTTCATCCTCTTCAATTCATGGAGATGAGATCAGATACGGTTGTCAATTACGAGAAAC 1750
Query 1372 TATCGAGATACCTTATGAACAGTCTCTGCAAAGTTCCGAAGAAATTGCCACCATGGGACC 1431
|||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1751 TATCGAGATACCCTATGAACAGTCTCTGCAAATTTCTGAAGAAATTGCCACCATGGGACC 1810
Query 1432 GATAAACAGGACAATC-AATTTCCAGGAGAATCTGGTTGAAAACATTATTCTAAATGTCA 1490
||||||| |||||| | ||||||||||||||||||| |||| ||||| |||| |||||
Sbjct 1811 GATAAACCGGACAA-CAAATTTCCAGGAGAATCTGGGCGAAAGCATTAACCTAACTGTCA 1869
Query 1491 CTCCAGAGGAACAACCCGAGGAGGAGACTATGGAAAACAAAGAATCCGGTTGGCAACTTA 1550
||| |||||||||| ||| |||| || ||||||||| ||||||||| |||||||||||
Sbjct 1870 CTCTAGAGGAACAAACCGTGGAGCAG---ATGGAAAACGAAGAATCCGATTGGCAACTTA 1926
Query 1551 TCAATGGTGAAACCAGTGCATGGAGAGATGACGCTGAAGAGGAAGCAGATACAGATGTTC 1610
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1927 TCAATGGTGCAACCAGTGCATGGAGAGATGACGCTGAAGAGGAGGCAGATACAGATGTTC 1986
Query 1611 CTGAGAATTTTCCAAATCAGTTATCCCAGATATCATCCGTGGACGAGGAGAGAGAAGCCC 1670
||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||
Sbjct 1987 CTGAGAATTTTCCAAATCAGTTATCCCAGTTATCATCTGTGGACGAGGACAGAGAAGCCA 2046
Query 1671 ATGTTCTCACAGAACTCGCGGAGATGCAACCTGATGAT-A--CTG-A--TCTTCAAAGCA 1724
| | ||| |||||| | |||||||| ||||||||| | ||| | |||||||||||
Sbjct 2047 ACATACTCGGGGAACTCACAGAGATGCAGCCTGATGATGATGCTGCATCTCTTCAAAGCA 2106
Query 1725 CAGTACAAGACTGGTCGGAAGAACATTCTGATCAGGACACAGTTTCACTTGGAAGGGC-A 1783
|| ||||||||||||| || ||||||||||||||||||||||||||| | |||||||| |
Sbjct 2107 CAATACAAGACTGGTCAGAGGAACATTCTGATCAGGACACAGTTTCAATGGGAAGGGCTA 2166
Query 1784 GCCACGTTCTTTCCTCCGGATGATGATACTGAAAACAACATGGAACTCCGAGAACTCTCG 1843
|||| ||||||||||||||||||| || ||| ||||||||||||||| |||||||||||
Sbjct 2167 -CCACATTCTTTCCTCCGGATGATGGTAATGAGAACAACATGGAACTCAGAGAACTCTCG 2225
Query 1844 AGCAGGAGACGTGTCTCAAATCTTCTGCAGAGCGGGTTTAGGGAAAATCTTAACCAGTTG 1903
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2226 AGCAGGAGACGTGTCTCAAATCTTCTGCAGAGCGGGTTTAGGGAAAATCTTAGCCAGTTG 2285
Query 1904 ATACAATCTTACATGGACAGACGAAGTCGAAATCCTGTCGACTGGGAAGAA-CACGAGAC 1962
|||||||||||||||||||||||||| | |||||||||||||||||||||| | ||||||
Sbjct 2286 ATACAATCTTACATGGACAGACGAAGCCAAAATCCTGTCGACTGGGAAGAAGC-CGAGAC 2344
Query 1963 TTATTCTGACCATACAATAGTAGGTGAAGATACAGAACAGCAGGATGATGCTCAGACTGG 2022
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 2345 TTATTCTGACCATACAATAGTAGGTGAAGATACCGAACAGCAGGATGATGCTCAGAGTGG 2404
Query 2023 TGGTCAAGAACTTGATGCTGTTGAATCTCCTCCTTTGTCTCTACCCTCCCCAGTGATCCC 2082
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 2405 TGGTCAAGAACTTGATGCTGTTGAATCTCCTCCTTTGACTCTACCCTCCCCAGTCATCCC 2464
Query 2083 TATTCAGCCACGGTGGGACCATGATCGATCTCATTCAAACTGGCCGGCACATGATTTGCA 2142
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2465 TATTCAGCCACGGTGGGACCATGATCGATCCCATTCAAACTGGCCGGCACATGATTTGCA 2524
Query 2143 TCAGGGCATCGGAATGGATTGGGATTCGATCAACGATTTGAGGGTTGACATGGGTAGAAT 2202
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2525 TCAGGGCATTGGAATGGATTGGGATTCGATCAACGATTTGAGGGTTGACATGGGTAGAAT 2584
Query 2203 ACAGCAAAGGATGGATAACTTGCAGAGAATGCTGGAGGCTTGCATGGAAATGCAACTCGA 2262
||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2585 ACAGCAAAGGATGGATAACCTGCAGAGGATGCTAGAGGCTTGCATGGAAATGCAACTCGA 2644
Query 2263 GTTACAACGGTCCATAAGACAAGAGGTCTCTGCTGCAATGCACCGCTCTACTGACCAATC 2322
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 2645 GTTACAACGGTCCATAAGACAAGAGGTCTCTGCTGCGATGCACCGCTCTACTGACCAACC 2704
Query 2323 AGGTCCATCCAAGGACACTGAGAGTTACGAGTCAAAATGGGAATATGTAAGGAAAGGGAT 2382
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2705 AGGTCCATCCAAGGACACTGCGAGTTACGAGTCAAAATGGGAATATGTAAGGAAAGGGAT 2764
Query 2383 CTGCTGCGTATGCTGCGAGAGCAACATCGATTCTTTATTGTATAGATGCGGACATATGAA 2442
|||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||
Sbjct 2765 CTGCTGCGTATGCTGCGAGAGCAATATTGACTCTTTATTGTATAGATGTGGACATATGAA 2824
Query 2443 CACCTGCGAGAAGTGTGCAAAGAAGCTAGTCGAAGCAGGAGGAAAATGTCCCATGTGCCA 2502
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 2825 CACCTGCGAGAAGTGTGCAAAGAAGCTAGTGGAAGCGGGAGGAAAATGTCCCATGTGTCA 2884
Query 2503 AGCCCCAGTGATTGAGGTAGTTCGTGCTTACTCTATTCTTTGAAACTCTTGTGCTCTCCT 2562
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2885 AGCCCCTGTGATTGAGGTAGTTCGTGCTTACTCTATTCTTTGAAACTCTTGTGCTCTCCT 2944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127323701334
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5