BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933241
Length=899
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52620.1 | Symbols: | F-box associated ubiquitination effec... 237 1e-61
> AT5G52620.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr5:21348554-21349681 REVERSE LENGTH=1128
Length=1128
Score = 237 bits (128), Expect = 1e-61
Identities = 361/466 (77%), Gaps = 45/466 (10%)
Strand=Plus/Plus
Query 1 TAGTATCAGCCGACTTGCATATGCAGTTACCTGGAGACATGGGATC-AGAGATTTGTGGT 59
||||||||||||| || |||||| |||||| | ||||||||||| | |||||||| |||
Sbjct 266 TAGTATCAGCCGATTTTCATATGGAGTTACGTAGAGACATGGGA-CAAGAGATTTTTGG- 323
Query 60 CC-TGTCTCTGGCTTGTTCTATTTCCCTAATATGCGGAGAAGTGAAGTGCCGGTGATATG 118
|| ||||||||| ||| ||||||||||||||| ||| | | | |||||||||||||||||
Sbjct 324 CCTTGTCTCTGGTTTGCTCTATTTCCCTAATACGCGTACAGGCGAAGTGCCGGTGATATG 383
Query 119 TAACCCTAGCACAGGACAGTACGCAAGATTACCTCAATTGAAAAGGAA-AAGGGATTCAA 177
|||||||||||| ||||| |||||||||||| ||||| || || | || ||| |
Sbjct 384 TAACCCTAGCACGGGACAATACGCAAGATTAACTCAAAGGAGTAGTATGAACA-ATTTGA 442
Query 178 GAAGCTTATTAGGTTATGATCCTATTGGCAAAAGATATAAAGTA-TCAAACATAAGAAAT 236
| ||||||||||| |||||||| |||||||||| ||| || ||| ||| || ||| | |
Sbjct 443 GCAGCTTATTAGGGTATGATCCGATTGGCAAAAAATACAAGGTAATCACACC-AAGCAGT 501
Query 237 TCA-ATTTATGGAGCATCTAATGAAGAGGGACATATTATGACATTAGGAACTGGGAAAA- 294
||| |||| || | | | | ||| | | |||| |||||||||||||||| ||||
Sbjct 502 TCACATTT-TG-ATC--C-A--GAA-A---A--TATTCTGACATTAGGAACTGG-AAAAG 547
Query 295 T-GTCATGGAGAAA-A-CTGCATTGTC-CGGAAAACCATTATCCT-ATAGGGGAAGGGGT 349
| | ||||||| | | | | || ||| || | | |||||||||| | || | ||||| |
Sbjct 548 TAG-CATGGAGGAGTATCCG-AT-GTCTCGTAGA-CCATTATCCTGAAAGTG-AAGGGAT 602
Query 350 ATGCATCGATGGGGTTTTGTATTACATTGCTGG-A-CAAG--CAAA---AG-G-TGTGAA 400
||||||| ||||||| ||||||||||| ||| | | ||| | | || | ||||||
Sbjct 603 ATGCATCAATGGGGTGTTGTATTACATGGCTAGCAACAAATTCCAGTTCAGTGGTGTGAA 662
Query 401 GTTAGCTTGCTTTGATGTTAGGAATGAAA-ATTTTAGGTTTCTTAA 445
| |||||| |||| |||| ||| |||||| | || || ||||||||
Sbjct 663 GATAGCTTCCTTTAATGTAAGGTATGAAACACTTAAG-TTTCTTAA 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43904644478
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5