BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933254

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G06700.1 | Symbols:  | Ribosomal L29e protein family | chr3:...   309    7e-84
  AT3G06680.1 | Symbols:  | Ribosomal L29e protein family | chr3:...   276    7e-74


> AT3G06700.1 | Symbols:  | Ribosomal L29e protein family | chr3:2117347-2118007 
REVERSE LENGTH=463
Length=463

 Score =  309 bits (167),  Expect = 7e-84
 Identities = 195/208 (94%), Gaps = 3/208 (1%)
 Strand=Plus/Plus

Query  15   CAGAGAATGGCCAAGTCGAAGAATCACACGGCGCATAACCAGTCTGCCAAGGCGCATAAG  74
            ||||| |||||||||||||||||||||||||||||||||||||| || || || || |||
Sbjct  101  CAGAG-ATGGCCAAGTCGAAGAATCACACGGCGCATAACCAGTCGGCGAAAGCCCACAAG  159

Query  75   AACGGAATCAAGAAGCCAAGGAGGCACCGTCACACCCCAACCAGAGGAATGGATCCTAAG  134
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct  160  AACGGAATCAAGAAGCCAAGGAGACACCGTCACACCCCAACCAGAGGAATGGACCCTAAG  219

Query  135  TTCCTGAGGAACCAGAGGTACGCAAGGAAGCACAACATCAAGAGC-GGCGAGAATGCTAG  193
            |||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct  220  TTCCTGAGGAACCAGAGGTACGCAAGGAAGCACAACGTCAAG-GCCGGCGAGAATGCTAG  278

Query  194  CGCTGAAGAATAAGTATTTTGATTCTCT  221
            ||||||||||||||| |||||||| |||
Sbjct  279  CGCTGAAGAATAAGTGTTTTGATTATCT  306


> AT3G06680.1 | Symbols:  | Ribosomal L29e protein family | chr3:2114254-2114879 
REVERSE LENGTH=402
Length=402

 Score =  276 bits (149),  Expect = 7e-74
 Identities = 196/218 (90%), Gaps = 5/218 (2%)
 Strand=Plus/Plus

Query  1    TTGTGTCGTTGTTACAGAGAATGGCCAAGTCGAAGAATCACACGGCGCATAACCAGTCTG  60
            ||||| |||||||||||| |||||| || |||||||||||||||||||| || |||||||
Sbjct  50   TTGTGCCGTTGTTACAGA-AATGGCGAAATCGAAGAATCACACGGCGCACAATCAGTCTG  108

Query  61   CCAAGGCGCATAAGAACGGAATCAAGAAGCCAAGGAGGCACCGTCACACCCCAACCAGAG  120
            ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct  109  CCAAGGCGCATAAGAACGGAATCAAGAAGCCAAGGAGACACCGTCACACACCAACCAGAG  168

Query  121  GAATGGATCCTAAGTTCCTGAGGAACCAGAGGTACGCAAGGAAGCACAACATCAAGAGCG  180
            ||||||||||||| ||||| || ||||||||||| ||||||||||||||| ||||||| |
Sbjct  169  GAATGGATCCTAAATTCCTAAGAAACCAGAGGTATGCAAGGAAGCACAACGTCAAGAGTG  228

Query  181  GCGAGAATGCTAGCG-CTGAAGAATA-AGTATTTTGAT  216
            ||||||||||| | | | ||||| || | | |||||||
Sbjct  229  GCGAGAATGCTGGTGTC-GAAGAGTAGA-TCTTTTGAT  264



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10204353047


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5