BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933257
Length=712
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27790.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1077 0.0
AT5G27300.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 963 0.0
> AT2G27790.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:11847182-11849507 REVERSE LENGTH=955
Length=955
Score = 1077 bits (583), Expect = 0.0
Identities = 630/653 (96%), Gaps = 2/653 (0%)
Strand=Plus/Plus
Query 1 TCGTCTCAGAATTGGAGAAGATGGGTCGATACAAAGATGAATCCCCAGCGGTTAGGGTTT 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 60 TCGTCTCAGAATTGGAGAAGATGGGTCGATACAAAGATGAAACCCCAGCGGTTAGGGTTT 119
Query 61 ATACAGTTTGCGATGAATCAAGATACTTGATAGTACGTAATGTCCCAGCTTTGGGTTGTG 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 120 ATACAGTTTGCGATGAATCAAGATACATGATAGTACGTAATGTCCCAGCTTTGGGTTGTG 179
Query 121 GTGATGATCTCATGAGATTATTCATGACTTATGGAGAAGTTGAAGAATGTAAACCTATGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTGATGATCTCATGAGATTATTCATGACTTATGGAGAAGTTGAAGAATGTAAACCTATGG 239
Query 181 ATGCAGAAGACTGTGCGGAGTTCACAGATGTCTACTGGATCAAGTTTCGTCTCATCACTA 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 ATGCAGAAGACTGTGCGGAGTTCACGGATGTCTACTGGATCAAGTTTCGTCTCATCACTA 299
Query 241 ACGCCAGATTTGCAAAGAGGAAATTGGATGAATCAACTTTTTTGGGAAATCGGCTCCAAA 300
| || ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 300 ATGCTAGATTTGCAAAGAGGAAGTTGGATGAATCAAGTTTTTTGGGAAATCGGCTCCAAA 359
Query 301 TTTCATATGCTCCTGAATACGAGAGCGTCAGTGACACAAAGGATAAGTTAGAAACTAGGA 360
|||||||||||||||||||||| | || | |||||||||||||||||||||| |||| |
Sbjct 360 TTTCATATGCTCCTGAATACGAAAATGTAAATGACACAAAGGATAAGTTAGAATCTAGAA 419
Query 361 GGAAAGAAGTGCTTGCAAGACTGAACCCCCAGAAAGCAAAGAGCACCTCCCAAGTTACAA 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 GGAAAGAAGTGCTTGCAAGACTGAACCCCCAGAAAGAAAAGAGCACCTCCCAAGTTACAA 479
Query 421 AATTGGCTGGACCAGCTTTGACCCAAACGGACAATTTTTC-TCCACAGCGGAGAGAGATG 479
|||||||||||||||||||||||||||| |||||| |||| || ||||||||||||||||
Sbjct 480 AATTGGCTGGACCAGCTTTGACCCAAACAGACAATGTTTCCTC-ACAGCGGAGAGAGATG 538
Query 480 GAGTACCAATTCCATAGAGGAAATGCTCCTGTTACTCGAGTTTCATCTGACCAGGAGTAT 539
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 539 GAGTACCAATTCCATAGAGGAAATGCTCCTGTTACTCGAGTTTCATCAGATCAGGAGTAT 598
Query 540 TTTGCGTCGTCTTCAATGAATCAGACGGTTAAAACTGTGAGGGAGAAACTCAATAAGATT 599
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTTGCGTCATCTTCAATGAATCAGACGGTTAAAACTGTGAGGGAGAAACTCAATAAGATT 658
Query 600 GAAGAAAGTGGTAACCAAAAGAGGTCACAACCAAGCAGCCAAACACAACCTGA 652
||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 659 GAAGAAAGTGGTAACCAAAAGAGGTTACAACCAAGCAGCCAAACACAACCTGA 711
Score = 195 bits (105), Expect = 7e-49
Identities = 111/114 (97%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 599 TGAAGAAAGTGGTAACCAAAAGAGGTCACAACCAAGCAGCCAAACACAACCTGACTTGAA 658
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 709 TGAAGAAAGTGGTAACCAAAAGAGGTTACAACCAAGCAGCCAAATACAACCTGACTTGAA 768
Query 659 GAGAACCCGAGTCGATAACCGAAGAAGAATATAACACACTTTTGTTTTGTTTCT 712
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GAGAACCCGAGTGGATAACCGAAGAAGAATATAACACACTTTTGTTTTGTTTCT 822
> AT5G27300.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:9620810-9624990 FORWARD LENGTH=1728
Length=1728
Score = 963 bits (521), Expect = 0.0
Identities = 596/630 (95%), Gaps = 14/630 (2%)
Strand=Plus/Plus
Query 64 CAGTTTGCGATGAATCAAGATACTTGATAGTACGTAATGTCCCAGCTTTGGGTTGTGGTG 123
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1112 CAGTTTGCGATGAATCAAGATACATGATAGTACGTAATGTGCCAGCTTTGGGTTGTGGTG 1171
Query 124 ATGATCTCATGAGATTATTCATGACTTATGGAGAAGTTGAAGAATGTAAACCTATGGATG 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 ATGATCTCATGAGATTATTCATGACTTATGGAGAAGTTGAAGAATGTAAACCTATGGATG 1231
Query 184 CAGAAGACTGTGCGGAGTTCACAGATGTCTACTGGATCAAGTTTCGTCTCATCACTAACG 243
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1232 CAGAAGACTGTGCGGAGTTCACGGATGTCTACTGGATCAAGTTTCGTCTCATCACT---- 1287
Query 244 CCAGATTTGCAAAGAGGAAATTGGATGAATCAACTTTTTTGGGAAATCGGCTCCAAATTT 303
| | ||| ||||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct 1288 --A-A--TGC---TAGGAAGTTGGATGAATCAAGTTTTTTGGGAAATCGGCTCCAAATCT 1339
Query 304 CATATGCTCCTGAATACGAGAGCGTCAGTGACACAAAGGATAAGTTAGAAACTAGGAGGA 363
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1340 CATATGCTCCTGAATACGAGAGCGTCAGTGACACAAAGGAGAAGTTAGAAACTAGAAGGA 1399
Query 364 AAGAAGTGCTTGCAAGACTGAACCCCCAGAAAGCAAAGAGCACCTCCCAAGTTACAAAAT 423
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1400 AAGAAGTGCTTGCAAGACTGAACCCCCATAAAGCAAAGAGCACCTCCCAAGTTACAAAAT 1459
Query 424 TGGCTGGACCAGCTTTGACCCAAACGGACAATTTTTCTCCACAGCGGAGAGAGATGGAGT 483
||||||||||||||||||||||||| ||||||||||| || | ||||||||||||||| |
Sbjct 1460 TGGCTGGACCAGCTTTGACCCAAACCGACAATTTTTCCCCTCGGCGGAGAGAGATGGATT 1519
Query 484 ACCAATTCCATAGAGGAAATGCTCCTGTTACTCGAGTTTCATC-TGACCAGGAGTATTTT 542
||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct 1520 ACCAATTCCATAGAGGAAATGCTCCTGTTACTCGAGTTTCATCAT-ATCAGGAGTATTTT 1578
Query 543 GCGTCGTCTTCAATGAATCAGACGGTTAAAACTGTGAGGGAGAAACTCAATAAGATTGAA 602
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1579 GCGTCATCTTCAATGAATCAGATGGTTAAAACTGTGAGGGAGAAACTCAATAAGATTGAA 1638
Query 603 GAAAGTGGTAACCAAAAGAGGTCACAACCAAGCAGCCAAACACAACCTGACTTGAAGAGA 662
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1639 GAAAGTGGTAACCAAAAGAGGTTACAACCAAGCAGCCAAACACAACCTGACTTCAAGAGA 1698
Query 663 ACCCGAGTCGATAACCGAAGAAGAATATAA 692
||||||||||||||||||||||||||||||
Sbjct 1699 ACCCGAGTCGATAACCGAAGAAGAATATAA 1728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34510858989
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5