BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933265

Length=870
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G27750.1 | Symbols:  | Surfeit locus protein 6 | chr2:118239...   630    5e-180


> AT2G27750.1 | Symbols:  | Surfeit locus protein 6 | chr2:11823916-11824461 
REVERSE LENGTH=546
Length=546

 Score =  630 bits (341),  Expect = 5e-180
 Identities = 433/477 (91%), Gaps = 8/477 (2%)
 Strand=Plus/Plus

Query  330  AAGCCTATGTTTCTTGGTTTTCAAGAAGATGATACATTTGAGAAGATGAGAGAACGCCGT  389
            ||||||| ||||||| |||| |||||||||||||||||||||||||||||| || |||||
Sbjct  7    AAGCCTAAGTTTCTTAGTTTGCAAGAAGATGATACATTTGAGAAGATGAGACAAAGCCGT  66

Query  390  CTTCAGAAGAATAAGAGGAAGAGAGACTCAGGTTTGAATGTTGTTGAAGAGGTTGTGAAG  449
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  67   CTTCAGAAGAATAAGAGGAAGAGAGACTCAGGTTTGAATGTTTTTGAAGAGGTTGTGAAG  126

Query  450  GATCTTACTTATGGTTATGTTAAGATTGGGGATGATGACGAGGA-ATACGGGAAAAACAG  508
            |||||||||||||||||| | ||||||||||| | ||||||| | |||||||||| ||||
Sbjct  127  GATCTTACTTATGGTTATATGAAGATTGGGGACGGTGACGAG-ATATACGGGAAACACAG  185

Query  509  AAAGAAGAAA-AGAGTTTCTAAGGCGACAGAGCTTGAAATGGCGATGAAGTTAGAGGCTT  567
            |||||| ||| || ||||||||||| | |||||||||||||||||||| |||||||||||
Sbjct  186  AAAGAA-AAAGAGGGTTTCTAAGGCTAAAGAGCTTGAAATGGCGATGACGTTAGAGGCTT  244

Query  568  TGAAGAAAGATCCTA-AGAAAGGAGATTTTGTTGC-AAAGAAGCACTCGTGGAAAGCGGC  625
            ||||||||||||  | ||||||| ||| ||||||| ||| || ||||||||| |||||||
Sbjct  245  TGAAGAAAGATCA-AGAGAAAGGGGATATTGTTGCGAAA-AATCACTCGTGGCAAGCGGC  302

Query  626  TATTAGCAGAGCTGCTGGTATCAAGATTCGTGATGATCCAAAGCGATTGAAGCAGAGAAT  685
            ||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct  303  TATAAGCAGAGCTGCTGGTATCAAGATTCATGATGATCCAAAGCGATTGAAGAAGAGAAT  362

Query  686  TCGCAAGGAAAAGAATAGGCGCGAGAAGAATGCAGAGAAGTGGAAGGAAAGAGTTGAAGT  745
            || |||||||| ||| | ||| ||||||||  | ||||||||||||||||||||||| ||
Sbjct  363  TCACAAGGAAACGAAGATGCGTGAGAAGAACACGGAGAAGTGGAAGGAAAGAGTTGACGT  422

Query  746  GCAACAGAAGGTTAGGGTAGAGAAACAGCAAAAGAGATCAGAGAATATTAGTGATAG  802
            |||||||||| |||||| |||||||||||||||||||||||||||| ||| ||||||
Sbjct  423  GCAACAGAAGTTTAGGGCAGAGAAACAGCAAAAGAGATCAGAGAATGTTATTGATAG  479



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42447854215


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5