BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933267

Length=382
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G27730.1 | Symbols:  | copper ion binding | chr2:11819829-11...   579    8e-165


> AT2G27730.1 | Symbols:  | copper ion binding | chr2:11819829-11821878 
REVERSE LENGTH=667
Length=667

 Score =  579 bits (313),  Expect = 8e-165
 Identities = 360/383 (94%), Gaps = 2/383 (1%)
 Strand=Plus/Plus

Query  1    CAGGATACTTCATCATTACCATGGCAACCAGAAATGCTTTGAGAATTGTGTCTCGTAGGT  60
            ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  79   CAGGATACTTCTTCATTACCATGGCAACAAGAAATGCTTTGAGAATTGTGTCTCGTAGGT  138

Query  61   TCTCCAGTGGCAAAATTTTTAGCGAAGAGGAGAAAGCTGCTGAGAACGTTTTCATTAAGA  120
            |||| ||||||||| || ||||||||||||||| ||| |||||||| |||||||||||||
Sbjct  139  TCTCTAGTGGCAAAGTTCTTAGCGAAGAGGAGAGAGCCGCTGAGAATGTTTTCATTAAGA  198

Query  121  AAATGGAGAAAGAGAAGCTTGAGAAGATAGCCCGACAGGGTCCTGGAGAACAAGCAGCAG  180
            |||||||| | ||||||||| ||||| |||| ||||||||||||||||||||||||||||
Sbjct  199  AAATGGAGCAGGAGAAGCTTCAGAAGTTAGCTCGACAGGGTCCTGGAGAACAAGCAGCAG  258

Query  181  GGACAGCAAGCGAAGCCAAGGCTGCTGGTGCAACAGCATCTGCATCAGCCGAGTCAGGCC  240
            || ||||||||||||| |||| ||||||||||||||||||||||||||| ||||| ||||
Sbjct  259  GGTCAGCAAGCGAAGCAAAGGTTGCTGGTGCAACAGCATCTGCATCAGCTGAGTCGGGCC  318

Query  241  CAAAGGTGTCAGAAGACAAGAACAGAAACTATGCAGTTGTGGCAGGTGTGGTGGCTATTT  300
            |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| 
Sbjct  319  CAAAGGTGTCAGAAGACAAGAACAGAAACTATGCGGTTGTGGCAGGTGTGGTTGCTATTG  378

Query  301  TCGGTTCGATTGGTTGGTACTTGAAAGCAGGTGGAAAGAAGCAGCCAGAGGTCCAAGAGT  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  379  TCGGTTCGATTGGTTGGTACTTGAAAGCAGGTGGAAAGAAGCAGCCAGAGGTCCAAGAGT  438

Query  361  AAAGGAGAT-GATTGATTGATGG  382
            |||| |||| |||||||||||||
Sbjct  439  AAAG-AGATAGATTGATTGATGG  460



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17995854142


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5