BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933273

Length=934
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G18900.2 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   100    2e-20
  AT3G17490.1 | Symbols:  | F-box and associated interaction doma...  84.2    2e-15
  AT3G18980.1 | Symbols: ETP1 | EIN2 targeting protein1 | chr3:65...  63.9    3e-09


> AT3G18900.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
cellular_component unknown; EXPRESSED IN: synergid; CONTAINS 
InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527), 
F-box associated interaction domain (InterPro:IPR017451), 
Protein of unknown function DUF547 (InterPro:IPR006869); 
BEST Arabidopsis thaliana protein match is: Protein 
of unknown function, DUF547 (TAIR:AT5G66600.3). | chr3:6517181-6521019 
FORWARD LENGTH=2500
Length=2500

 Score =  100 bits (54),  Expect = 2e-20
 Identities = 126/158 (80%), Gaps = 15/158 (9%)
 Strand=Plus/Plus

Query  567   GTTGTTGGAGAAGAGAAACTTTCTGTGTTATTACAGCATGCAGATACA--T-C-AAGAAC  622
             |||||| ||||||||||||||||||||||||||||||  | ||||| |  | | |||| |
Sbjct  1981  GTTGTTAGAGAAGAGAAACTTTCTGTGTTATTACAGC--G-AGATATAAGTTCCAAGA-C  2036

Query  623   AGAGATATGGGTGACGAA-TAAGATTGATGAGACCA--AG-GTTGT-TAAGTGGAGCAAG  677
              |||||||||||||| || |||||||||||| ||||  |  || || |   |||||||||
Sbjct  2037  TGAGATATGGGTGAC-AAGTAAGATTGATGACACCACCAAAGTGGTGTCT-TGGAGCAAG  2094

Query  678   GTCTTAACAGTGGATTTGAAACCTGAGCTTGATATTTG  715
              ||||| || |||||||||  ||| | ||| | |||||
Sbjct  2095  ATCTTAGCATTGGATTTGAGCCCTCATCTTCAGATTTG  2132


> AT3G17490.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:5984827-5985993 FORWARD LENGTH=1167
Length=1167

 Score = 84.2 bits (45),  Expect = 2e-15
 Identities = 85/104 (82%), Gaps = 3/104 (3%)
 Strand=Plus/Plus

Query  133  TCTCTCACTGCAACGGTTTATTGTTATGCAACAACGGAGAAT-ACAATAGAATAGTGGTT  191
            ||| || |||| |||||||| | ||||||  | ||| ||  | ||| |||| | ||||||
Sbjct  311  TCTATCCCTGCGACGGTTTAATATTATGC-TCCACGAAGCGTAACACTAGACTCGTGGTT  369

Query  192  TGGAACCCCTGTACCGGTCAAACCAAGTGGATCGAAC-CAAGAA  234
            ||||||||||||||||||||||||| ||||||| ||| || |||
Sbjct  370  TGGAACCCCTGTACCGGTCAAACCAGGTGGATCAAACGCAGGAA  413


> AT3G18980.1 | Symbols: ETP1 | EIN2 targeting protein1 | chr3:6546463-6548062 
FORWARD LENGTH=1600
Length=1600

 Score = 63.9 bits (34),  Expect = 3e-09
 Identities = 73/90 (81%), Gaps = 10/90 (11%)
 Strand=Plus/Plus

Query  573  GGAGAAGAGAAACTTTCTGTGTTATTACAGCATGCAGA---T-ACATC-AAGAACAGAGA  627
            |||| |||||| |||||| |||| || |||| | | ||   | | ||| ||| || ||||
Sbjct  856  GGAGGAGAGAATCTTTCTCTGTTGTTGCAGC-T-C-GATTTTGA-ATCTAAG-ACTGAGA  910

Query  628  TATGGGTGACGAATAAGATTGATGAGACCA  657
            ||||||||||||||||||||||||| ||||
Sbjct  911  TATGGGTGACGAATAAGATTGATGACACCA  940



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45662839623


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5