BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933275
Length=1537
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27690.1 | Symbols: CYP94C1 | cytochrome P450, family 94, su... 2409 0.0
> AT2G27690.1 | Symbols: CYP94C1 | cytochrome P450, family 94,
subfamily C, polypeptide 1 | chr2:11809306-11811215 FORWARD
LENGTH=1910
Length=1910
Score = 2409 bits (1304), Expect = 0.0
Identities = 1454/1528 (95%), Gaps = 3/1528 (0%)
Strand=Plus/Plus
Query 11 CTCATCAACAATGTTACTAATCATAtctttcatcatcgtctccttcttcttcttcataat 70
||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||
Sbjct 58 CTCATCAACAATGTTACTAATCATATCATTCACCATCGTCTCCTTCTTCTTCATCATAAT 117
Query 71 attctcactctttcacatactcttccttcAAAAATTACGTTACTGCAACTGCGAGATCTG 130
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 118 ATTCTCACTCTTTCACTTACTCTTCCTTCAAAAACTACGTTACTGCAACTGCGAGATCTG 177
Query 131 CCATGCTTATCTCACTTCAAGCTGGAGAAAAGACTTCATCAATCTCAGTGATTGGTACAC 190
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 178 TCATGCTTATCTCACTTCAAGCTGGAAAAAAGACTTCATCAATCTCAGTGATTGGTACAC 237
Query 191 TCATCTTCTCCGGCGATCTCCAACGTCAACGATCAAAGTCCACGTCTTAAACAGTGTTAT 250
||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 238 TCATCTTCTCCGGCGGTCTCCGACGTCAACGATCAAAGTACACGTCTTAAACAGCGTTAT 297
Query 251 CACAGCGAATCCATCAAACGTTGAACATATCCTCAAAACCCATTTCCACAGTTACCCAAA 310
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 298 CACAGCGAATCCATCAAACGTTGAACATATCCTCAAAACCAATTTCCACAATTACCCAAA 357
Query 311 AGGCAAACAATTCTCCGTTATCCTTGGTGATCTTTTAGGCCGTGGAATCTTCAATTCCGA 370
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 358 AGGCAAACAATTCTCTGTTATCCTCGGTGATCTTTTAGGCCGTGGAATCTTCAATTCCGA 417
Query 371 TGGTGACACGTGGCGTTTCCAGAGAAAACTCGCGAGTTTGGAACTTGGAAGTGTTTCTGT 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TGGTGACACGTGGCGTTTCCAGAGAAAACTCGCGAGTTTGGAACTTGGAAGTGTTTCTGT 477
Query 431 AAGAGTTTTCGCTCATGAGATTGTTAAGACCGAGATCGAGACACGTCTTCTTCCGATTTT 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 478 AAGAGTTTTCGCTCATGAGATTGTTAAGACCGAGATCGAGACACGTCTTCTTCCGATATT 537
Query 491 GACTTCATTCTCCGACAATCCTGGTTCGGTTTTGGATCTACAAGATGTGTTTAGAAGATT 550
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 538 GACTTCGTTTTCCGACAATCCTGGTTCTGTTTTGGATCTACAAGATGTGTTTAGAAGATT 597
Query 551 CTCGTTTGATACGATTAGTAAATTGTCATTTGGGTTTGACCCAGATTGTCTCCGGTTACC 610
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 598 CTCGTTTGATACGATTAGTAAATTGTCGTTTGGGTTTGACCCAGATTGTCTCCGGTTACC 657
Query 611 TTTTCCGATGTCGGAATTCGCCGTCGCTTTCGATACGGCCTCGACGTTATCGGCGAAACG 670
||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 658 TTTTCCGATATCGGAATTCGCCGTCGCTTTCGATACGGCGTCGTTGTTATCGGCGAAACG 717
Query 671 AGCTTTAGCTCCGTTTCCTCTGTTATGGAAAATCAAAAGGTTTTTAAGAATTGGTTCTGA 730
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 718 AGCTTTAGCTCCGTTTCCTCTGTTATGGAAAACCAAAAGGCTTTTAAGAATTGGTTCTGA 777
Query 731 GAAAAAGCTTAAAGAATCGATCAATGTGATAAACCGGTTAGCTGGTGATTTAATCAAGCA 790
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GAAAAAGCTTCAAGAATCTATCAATGTGATAAACCGGTTAGCTGGTGATTTAATCAAGCA 837
Query 791 TCGGAGGTTAACCGGTTTAATGGGTAAAAACGATTTGATTTCGAGATTCATGGCGGTGGT 850
||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 838 ACGGAGGTTAACCGGTTTGATGGGTAAAAATGATTTGATTTCTAGATTCATGGCGGTTGT 897
Query 851 AGCGGAGGACGATGATGAGTATCTCCGAGACATCGTTGTGAATTTTCTATTGGCGGGTCG 910
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 898 GGCGGAGGACGATGATGAGTATCTCCGAGACATCGTTGTGAGTTTTCTATTGGCTGGTCG 957
Query 911 GGATACGGTTGCTGCTGGTTTAACCGGTTTTTTCTGGTTATTGATGCGTCATCCGGATGT 970
||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| ||
Sbjct 958 GGATACGGTAGCTGCTGGTTTAACCGGATTTTTCTGGTTATTGACCCGTCATCCGGAAGT 1017
Query 971 GGAGAACCGGATTCGGGAAGAATTAGACCGGGTGATGGGGACCGGTTTTGACTCGGTCAC 1030
|||||||||||| ||||||||| | |||||||| |||||||||||||||||||| |||||
Sbjct 1018 GGAGAACCGGATCCGGGAAGAACTGGACCGGGTTATGGGGACCGGTTTTGACTCAGTCAC 1077
Query 1031 TGCACGTTGCGATGAAATGAGAGAGATGGATTATTTGCATGCGGCGCTTTACGAGAGCAT 1090
||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1078 TGCTCGTTGCGATGAAATGAGAGAGATGGATTATTTGCATGCGTCGCTGTACGAGAGCAT 1137
Query 1091 GAGATTGTTTCCGCCGGTTCAATTCGATTCCAAATTTGCTTTAAACGATGACGTTTTGTC 1150
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1138 GAGATTGTTTCCGCCGGTTCAATTCGATTCCAAATTCGCTTTAAACGATGACGTTTTGTC 1197
Query 1151 TGATGGTACATTTGTGAAAAGAGGGACTAGAGTCACGTACCATGCTTATGCAATGGGTCG 1210
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TGATGGTACATTTGTGAATAGTGGGACTAGAGTCACGTACCATGCTTATGCAATGGGTCG 1257
Query 1211 GATGGACCGGATCTGGGGTCCGGATTACGAAGAGTTTAAACCGGAGAGGTGGTTGGATAA 1270
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1258 GATGGACCGGATCTGGGGCCCGGATTACGAAGAGTTTAAACCAGAGAGGTGGTTGGATAA 1317
Query 1271 CGAAGGAAAATTCCGGCCCGAGAATCCGGTTAAATACCCGGTTTTTCAGGCCGGAGCTAG 1330
|||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1318 CGAAGGTAAGTTCCGGCCCGAGAATCCGGTTAAGTACCCGGTTTTCCAGGCCGGAGCTAG 1377
Query 1331 GGTTTGTGTCGGGAAAGAAATGGCCATCATGGAGATGAAATCCATAG-TCGTGGCAATCA 1389
||||||| |||||||||| ||||| |||||||||||||||||||||| | ||||||||||
Sbjct 1378 GGTTTGTATCGGGAAAGAGATGGCTATCATGGAGATGAAATCCATAGCT-GTGGCAATCA 1436
Query 1390 TTAGGAGGTTCAAAACACGGCTCGCAAGTCTCGAATCAACCAAAACACTCCGGTTTGCGC 1449
||||||||||| |||||||| ||||||||| |||| ||||| | ||||||||||||||||
Sbjct 1437 TTAGGAGGTTCGAAACACGGGTCGCAAGTCCCGAAACAACCGAGACACTCCGGTTTGCGC 1496
Query 1450 CTGGTTTAACCGCGACGGTTAATGGTGGATTGCCGGTTATGATCCAAGAGAGGAGTCAAG 1509
|||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| | |
Sbjct 1497 CTGGTTTAACTGCGACGGTTAACGGTGGATTGCCGGTTATGATCCAAGAAAGGAGTTA-G 1555
Query 1510 ACTCATAAAAGCATTAAGTCAAGATATA 1537
||||||||||||||||||||||||||||
Sbjct 1556 ACTCATAAAAGCATTAAGTCAAGATATA 1583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75853023495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5