BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933276
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27680.1 | Symbols: | NAD(P)-linked oxidoreductase superfam... 1808 0.0
> AT2G27680.1 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr2:11803811-11806013 REVERSE LENGTH=1373
Length=1373
Score = 1808 bits (979), Expect = 0.0
Identities = 1130/1203 (94%), Gaps = 10/1203 (1%)
Strand=Plus/Plus
Query 1 AGAAGCGAGAGAGTGAGGCCATGCCTGTGTCCGTACATTCCGTTATCGCCACGAACCTAG 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 29 AGAAGCGACAGAGTGAGGCCATGCCTGTGTCCGTACATTCCGTTATCGCCACGAACCTAG 88
Query 61 CGACTACAGTATCATCGAATCGGTTTCACCGGAATGTTTCTCGCCGTCTAATC-AGCTCA 119
| |||||| |||||||||| || |||||||||||||||||||| || | | |||
Sbjct 89 CCACTACACTATCATCGAA-----TT-ACCGGAATGTTTCTCGCCGTAGAA-CTATCTCC 141
Query 120 AGCTCCGTGAAATGCTCGGTGGAGACGAAGGAAGCTGATCGGTGGGTGAAGCTGAAGAAC 179
| ||| ||||| || |||||||||| | ||| |||||||||| |||||| |||||||||
Sbjct 142 ACCTCTGTGAATTGTTCGGTGGAGATTACGGAGGCTGATCGGTCGGTGAAACTGAAGAAC 201
Query 180 GGTAACGATTCACTGGAGATATGCAGAGTTCTTAATGGAATGTGGCAAACGAGTGGAGGA 239
|| ||||||||||||||||||||||||||||| || || |||||||||||||| ||||||
Sbjct 202 GGGAACGATTCACTGGAGATATGCAGAGTTCTCAACGGGATGTGGCAAACGAGCGGAGGA 261
Query 240 TGGGGGAGGATTGACCGAAACGACGCCGTTGATGCAATGCTTCGACACGCTGATGCTGGT 299
||||||| |||||| |||||||||||||||||| |||||||||| |||| |||||||||
Sbjct 262 TGGGGGAAGATTGATCGAAACGACGCCGTTGATTCAATGCTTCGTTACGCCGATGCTGGT 321
Query 300 CTCTCTACTTTCGATATGGCTGATCATTATGGTCCTGCTGAAGATCTTTACGGCATTTTT 359
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 322 CTCTCTACTTTCGATATGGCTGATCACTATGGTCCTGCTGAAGATCTTTACGGTATTTTT 381
Query 360 ATCAATAGAGTTCGTCGAGAGCGTCCACCGGAGTATTTGGAGAAGATTAAAGGTTTGACA 419
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 382 ATCAATAGAGTTCGTCGAGAGCGTCCACCGGAGTACTTGGAGAAGATTAAAGGTTTGACA 441
Query 420 AAATGGGTGCCTCCTCCAATAAAGATGACAAGTAGCTATGTTCGTCAGAACATTGATATA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 442 AAATGGGTGCCTCCTCCAATAAAGATGACAAGTAGCTATGTTCGTCAGAACATCGATATA 501
Query 480 TCGCGGAAGAGAATGGATGTGGCTGCTCTTGATATGCTTCAGTTTCATTGGTGGGATTAT 539
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 502 TCGAGGAAGAGAATGGATGTGGCTGCTCTTGATATGCTTCAGTTTCACTGGTGGGATTAT 561
Query 540 GCGAATGACGGCTATCTTGATGCACTGAAACATCTCACTGACCTGAAAGAAGAAGGGAAA 599
|||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct 562 GCGAATGACGGCTATCTTGATGCACTGAAACATCTCACAGACTTGAAGGAAGAAGGGAAA 621
Query 600 ATCAAGACTGTTGCTTTGACAAATTTTGATACAGAGAGACTTCAAAAAATCTTAGAGAAT 659
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 622 ATCAAGACTGTTGCTTTGACTAATTTTGATACAGAGAGACTTCAGAAAATCTTAGAGAAT 681
Query 660 GGAATCCCGGTTGTCAGCAATCAAGTGCAACACTCTATTGTAGATATGCGTCCTCAACAG 719
|||||||| || || |||||||| ||||||||||| || ||||| |||||||||||||||
Sbjct 682 GGAATCCCTGTCGTTAGCAATCAGGTGCAACACTCCATCGTAGACATGCGTCCTCAACAG 741
Query 720 AGAATGGCTCAGCTTTGCGAGCTTACAGGCGTCAAACTTATAACATATGGGACAGTAATG 779
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 742 AGAATGGCTCAGCTTTGCGAGCTTACAGGGGTCAAACTTATAACATATGGGACAGTTATG 801
Query 780 GGTGGTCTCCTGTCAGAGAAGTTTCTTGATACCAATCTAACAATCCCTTTTGCTGGCCCT 839
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 GGTGGTCTCTTGTCAGAGAAGTTTCTTGATACCAATCTAACAATCCCTTTTGCTGGCCCT 861
Query 840 CGCTTGAATACTCCTTCTCTGCAAAAGTACAAAAGGATGGTTGATGCATGGGGAGGGTGG 899
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 862 CGCTTGAATACTCCATCTCTCCAAAAATACAAAAGGATGGTTGATGCATGGGGAGGGTGG 921
Query 900 AATCTATTTCAAGGTCTACTTCGAACAATGAAGAGCATATCCACAAAACATGGAGTCTCT 959
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 922 AATCTATTTCAAGGTTTACTTCGAACAATGAAGACCATATCCACAAAACATGGAGTCTCT 981
Query 960 ATACCAACAGTGGCTGTGAGATATGTACTAGATCAGCAAGGAGTTGGTGGATCAATGATT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 ATACCAACAGTGGCTGTGAGATATGTACTAGATCAGCAAGGAGTTGGTGGATCAATGATT 1041
Query 1020 GGGGTGAGGCTCGGGTTAGCGGAACACATACAAGACGCAAACGCTATATTCTCATTGGTA 1079
|| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1042 GGAGTGAGACTCGGGTTAGCGGAACACATACAAGACGCAAATGCTATATTCTCATTGGTA 1101
Query 1080 TTGGATGAAGAAGATGTGAATAGCATTCAAGAGGTTACCAAGAAAGGTAAAAATCTTCTC 1139
||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1102 TTGGATGAAGAAGATGTTAATAGCATACAAGAGGTTACCAAGAAAGGTAAAGATCTTCTC 1161
Query 1140 CAAGTGATTGGTGATTGTGGAGACGAATACCGACGTATATGATGTGGTAG-TATATACTC 1198
|||||||||||||| || |||||||||||||||||||||||||||| ||| ||| |||||
Sbjct 1162 CAAGTGATTGGTGACTGCGGAGACGAATACCGACGTATATGATGTG-TAGCTATGTACTC 1220
Query 1199 TAT 1201
|||
Sbjct 1221 TAT 1223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58985640375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5