BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg933278 Length=1114 Score E Sequences producing significant alignments: (Bits) Value AT3G18910.1 | Symbols: ETP2 | EIN2 targeting protein2 | chr3:65... 91.6 1e-17 AT3G18330.1 | Symbols: | F-box family protein | chr3:6291127-6... 87.9 2e-16 AT2G07130.1 | Symbols: | pseudogene, hypothetical protein | ch... 65.8 9e-10 > AT3G18910.1 | Symbols: ETP2 | EIN2 targeting protein2 | chr3:6521719-6523043 FORWARD LENGTH=1325 Length=1325 Score = 91.6 bits (49), Expect = 1e-17 Identities = 112/141 (79%), Gaps = 9/141 (6%) Strand=Plus/Plus Query 42 TTGGTAGAGGAGATACTCTGTCGCGTTCCAACAATATCGCTGA-ACCGATTACGATATAC 100 ||||||||||||||||||||||||||||| ||| ||| |||| || | ||||||| || Sbjct 75 TTGGTAGAGGAGATACTCTGTCGCGTTCCGGCAACATCTCTGAGAC-GTTTACGATCGAC 133 Query 101 ATGTAAA-CGATGGAACAGATTATTCAACCAA-A--GGAGATTCA-CAAGAAAGCATTTA 155 || ||| | ||||||| | |||||||| | ||| ||| | |||| |||||||| Sbjct 134 TTGCAAAGC-ATGGAACCGTTTATTCAAAGGTGATCGGATATT-AGCAAGTAAGCATTTT 191 Query 156 GACAAAGCCGCAAAACAGTTT 176 || ||| |||||||||||||| Sbjct 192 GAAAAATCCGCAAAACAGTTT 212 > AT3G18330.1 | Symbols: | F-box family protein | chr3:6291127-6292257 REVERSE LENGTH=1131 Length=1131 Score = 87.9 bits (47), Expect = 2e-16 Identities = 117/148 (79%), Gaps = 16/148 (11%) Strand=Plus/Plus Query 740 TCTATCTGTTGTTAGA-GAGGAGAAACTCTCCGTGTTATTA-CAGC-ACGAAAATACAT- 795 ||| || ||||||||| || ||||||||| || ||||| || | || | || || | || Sbjct 759 TCTTTCCGTTGTTAGAGGA-GAGAAACTCGCCTTGTTA-TATCGGCGA-GATAAGAGATC 815 Query 796 CAAGGACAGAAATATGGGTGACAAATAAGATTGATGACACCA---AAGT-G--GTGTCGT 849 ||||| | || ||||||||||||||||||||||||||||||| ||| | || || | Sbjct 816 CAAGG-CTGAGATATGGGTGACAAATAAGATTGATGACACCACCGAAGGAGCAGTTTCTT 874 Query 850 GGAGCAAGGTCTTA-ACAGTGGATTTGA 876 ||| |||||||||| | | ||||||||| Sbjct 875 GGACCAAGGTCTTAGA-ATTGGATTTGA 901 > AT2G07130.1 | Symbols: | pseudogene, hypothetical protein | chr2:2955677-2956900 FORWARD LENGTH=1224 Length=1224 Score = 65.8 bits (35), Expect = 9e-10 Identities = 71/87 (82%), Gaps = 7/87 (8%) Strand=Plus/Plus Query 796 CAAGGACAGAAATATGGGTGACAAATAAGATTGATGACACCA---AAGT-G--GTGTCGT 849 ||||| | || ||||||||||||||||||||||||||||||| ||| | || || | Sbjct 889 CAAGG-CTGAGATATGGGTGACAAATAAGATTGATGACACCACCGAAGGAGCAGTTTCTT 947 Query 850 GGAGCAAGGTCTTAACAGTGGATTTGA 876 ||| |||||||||| | ||||||||| Sbjct 948 GGACCAAGGTCTTAGTATTGGATTTGA 974 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54618192960 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5