BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933278

Length=1114
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G18910.1 | Symbols: ETP2 | EIN2 targeting protein2 | chr3:65...  91.6    1e-17
  AT3G18330.1 | Symbols:  | F-box family protein | chr3:6291127-6...  87.9    2e-16
  AT2G07130.1 | Symbols:  | pseudogene, hypothetical protein | ch...  65.8    9e-10


> AT3G18910.1 | Symbols: ETP2 | EIN2 targeting protein2 | chr3:6521719-6523043 
FORWARD LENGTH=1325
Length=1325

 Score = 91.6 bits (49),  Expect = 1e-17
 Identities = 112/141 (79%), Gaps = 9/141 (6%)
 Strand=Plus/Plus

Query  42   TTGGTAGAGGAGATACTCTGTCGCGTTCCAACAATATCGCTGA-ACCGATTACGATATAC  100
            |||||||||||||||||||||||||||||  ||| ||| |||| || | |||||||  ||
Sbjct  75   TTGGTAGAGGAGATACTCTGTCGCGTTCCGGCAACATCTCTGAGAC-GTTTACGATCGAC  133

Query  101  ATGTAAA-CGATGGAACAGATTATTCAACCAA-A--GGAGATTCA-CAAGAAAGCATTTA  155
             || ||| | ||||||| | ||||||||     |  ||| ||| | |||| |||||||| 
Sbjct  134  TTGCAAAGC-ATGGAACCGTTTATTCAAAGGTGATCGGATATT-AGCAAGTAAGCATTTT  191

Query  156  GACAAAGCCGCAAAACAGTTT  176
            || ||| ||||||||||||||
Sbjct  192  GAAAAATCCGCAAAACAGTTT  212


> AT3G18330.1 | Symbols:  | F-box family protein | chr3:6291127-6292257 
REVERSE LENGTH=1131
Length=1131

 Score = 87.9 bits (47),  Expect = 2e-16
 Identities = 117/148 (79%), Gaps = 16/148 (11%)
 Strand=Plus/Plus

Query  740  TCTATCTGTTGTTAGA-GAGGAGAAACTCTCCGTGTTATTA-CAGC-ACGAAAATACAT-  795
            ||| || ||||||||| || ||||||||| || ||||| || | || | || || | || 
Sbjct  759  TCTTTCCGTTGTTAGAGGA-GAGAAACTCGCCTTGTTA-TATCGGCGA-GATAAGAGATC  815

Query  796  CAAGGACAGAAATATGGGTGACAAATAAGATTGATGACACCA---AAGT-G--GTGTCGT  849
            ||||| | || |||||||||||||||||||||||||||||||   |||  |  || || |
Sbjct  816  CAAGG-CTGAGATATGGGTGACAAATAAGATTGATGACACCACCGAAGGAGCAGTTTCTT  874

Query  850  GGAGCAAGGTCTTA-ACAGTGGATTTGA  876
            ||| |||||||||| | | |||||||||
Sbjct  875  GGACCAAGGTCTTAGA-ATTGGATTTGA  901


> AT2G07130.1 | Symbols:  | pseudogene, hypothetical protein | 
chr2:2955677-2956900 FORWARD LENGTH=1224
Length=1224

 Score = 65.8 bits (35),  Expect = 9e-10
 Identities = 71/87 (82%), Gaps = 7/87 (8%)
 Strand=Plus/Plus

Query  796  CAAGGACAGAAATATGGGTGACAAATAAGATTGATGACACCA---AAGT-G--GTGTCGT  849
            ||||| | || |||||||||||||||||||||||||||||||   |||  |  || || |
Sbjct  889  CAAGG-CTGAGATATGGGTGACAAATAAGATTGATGACACCACCGAAGGAGCAGTTTCTT  947

Query  850  GGAGCAAGGTCTTAACAGTGGATTTGA  876
            ||| ||||||||||  | |||||||||
Sbjct  948  GGACCAAGGTCTTAGTATTGGATTTGA  974



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 54618192960


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5