BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933284
Length=625
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27650.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 752 0.0
AT2G27630.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 688 0.0
AT5G51530.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 553 8e-157
AT1G52430.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 549 1e-155
AT1G52450.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 538 2e-152
AT1G65130.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 520 9e-147
AT1G65110.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 472 2e-132
> AT2G27650.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related
protein | chr2:11792825-11797712 REVERSE LENGTH=3861
Length=3861
Score = 752 bits (407), Expect = 0.0
Identities = 481/517 (93%), Gaps = 3/517 (1%)
Strand=Plus/Plus
Query 2 CCTAGAAGAAGTTATTTCCATGTCGAGTGGTGCTGCTGAGGTTCTTGTAGCCATCCTTGA 61
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2997 CCTAGAAGAAGTTCTTTCCATGTCGAGTGGTGCTGCTGAGGTTCTTGTAGCCATCCTTGA 3056
Query 62 GTTTTGGCATTGCTGGAAGAATGCTGAAAGAGAAAGCTTGGTAACTCGCCTTTTTACGTT 121
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 3057 GTTTTGGCATTGCTGGAAGAATGCTGAAAGAGAAAGCCTGGTAACTCGTCTTTTTACGTT 3116
Query 122 GGAGGAAAATGAAAGAATGAGTTGTAGAAAGTGCAGAAAGAAACTAAATTACCCGGAGCA 181
||||||||| |||||||||||||||||||| ||||||||||||| ||| || || |||||
Sbjct 3117 GGAGGAAAAGGAAAGAATGAGTTGTAGAAAATGCAGAAAGAAACCAAACTATCCAGAGCA 3176
Query 182 AAGTTCTTATGGTATTGTTATGGCTGCAGATTCAATCAGAGACTTGAAGTGTGGTCTTGG 241
|||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 3177 AAGTTCTTATGGCATTGTTATGGCTGCAGATTCTATCAGAGACTTGAAGTGTGCTCTTGG 3236
Query 242 GTATATTGAGTTTGTGGATATCTTTAAGGTGATCCGCATGGAATGTAAAATGTTATGTGA 301
| |||| ||||||||||||||| ||||||||||||| ||||| | || |||| |||||||
Sbjct 3237 GAATATAGAGTTTGTGGATATCCTTAAGGTGATCCGGATGGATTATACAATGCTATGTGA 3296
Query 302 CATTAAAACCGGAGGCTGTGGAATAACAAACTTTATTCATCACATTATAAGTAAATGCCC 361
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 3297 CATTAAAAACGGAGGCTGTGGAATAGCAAACTTTATTCATCACATTATAAGTAAATGCCC 3356
Query 362 ACCTATCTTCACAATTGTGTTAGAATGGGAGAAA-AGTGAAACTGAAAAAGAAATATATG 420
|||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| ||
Sbjct 3357 ACCTATCTTCACAATTGTGTTAGAGTGGGA-AAAGAGTGAAACTGAAAAAGAAATATCTG 3415
Query 421 AAACAACAATGGCTTTGGACTGGGAGATAGATTTCAGCAGACTGTACGAAGGCTTAGAAC 480
||||||||| ||||| || |||||||||||| ||||||||||||||| |||||||||||
Sbjct 3416 AAACAACAAAAGCTTTTGAGTGGGAGATAGATATCAGCAGACTGTACGCAGGCTTAGAAC 3475
Query 481 CGAAAACTAACTACCGGCTTGTGTCAATGGATG-TTG 516
| ||||||||||||||||||| |||||||| || |||
Sbjct 3476 CAAAAACTAACTACCGGCTTGCGTCAATGGTTGGTTG 3512
Score = 178 bits (96), Expect = 6e-44
Identities = 110/117 (94%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 509 GGATGTTGGTAACTGGAAGAGTGTGGTTAGATTCTGTGGAGAAAGAAAGATTCGGCCAGA 568
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3594 GGATGTTGGTAACTGGAAGAGTGTGGTTAGATTCTGTGGAGAAAGAAAGGTTCGGCCAGA 3653
Query 569 AATTCTGTTTTACGAAGTTGTCCGAGCAATGGCCTAACAAGTCTATCAAAATGAAAA 625
|||||||||||||||||||||||| ||||||||| |||||| | ||| ||||||||
Sbjct 3654 GATTCTGTTTTACGAAGTTGTCCGATCAATGGCCTGACAAGTGTTTCAGAATGAAAA 3710
> AT2G27630.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related
protein | chr2:11787398-11792604 REVERSE LENGTH=4234
Length=4234
Score = 688 bits (372), Expect = 0.0
Identities = 474/522 (91%), Gaps = 11/522 (2%)
Strand=Plus/Plus
Query 1 CCCTAGAAGAAGTTATTTCCATGTCGAGTGGTGCTGCTGAGGTTCTTGTAGCCATCCTTG 60
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 3257 CCCTAGAAGAAGTTATTTCCATGTCGAGTGATGCTGCTGAGGTTCTTGTAACCATCCTTG 3316
Query 61 AGTTTTGGCATTGCTGGAAGAATGCTGAAAGAGAAAGCTTGGTAACTCGCCTTTTTACGT 120
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3317 AGTCTTGGCATTGCTGGAAGAATGCTGAAAGGGAAAGCTTGGTAACTCGCCTTTTTACGT 3376
Query 121 TGGAGGAAAATGAAAGAATGAGTTGTAGAAAGTGCAGAAAGAAACTAAATTACCCGGAGC 180
||||||||||||||||||||||||||||||| ||||||||||||| |||||| || ||||
Sbjct 3377 TGGAGGAAAATGAAAGAATGAGTTGTAGAAAATGCAGAAAGAAACCAAATTATCCAGAGC 3436
Query 181 AAAGTTCTTATGGTATTGTTATGGCTGCAGATTCAATCAGAGACTTGAAGTGTGGTCTTG 240
||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 3437 AAAGTTCATATGGCATTGTTATGGCTGCAGATTCTATCAGAGACTTGAAGTGTGCTCTTG 3496
Query 241 GGTATATTGAGTTTGTGGATATCTTTAAGGTGATCCGCATGGAATGTAAAATGTTATGTG 300
|| |||| ||||||||||||||| ||||||||||||| ||||| | || |||| |||| |
Sbjct 3497 GGAATATAGAGTTTGTGGATATCCTTAAGGTGATCCGGATGGATTATACAATGCTATGCG 3556
Query 301 ACATTAAAACCGGAGGCTGTGGAATAACAAACTTTATTCATCACAT-TATAAGTAAATGC 359
| ||||||||||||||||||||||||||||| || |||||||||| | ||||||||||
Sbjct 3557 ATGTTAAAACCGGAGGCTGTGGAATAACAAACCTTGTTCATCACATCT-TAAGTAAATGT 3615
Query 360 CCACCTATCTTCACAATTGTGTTAGAATGGGAGAAAAGTGAAACTGAAAAAGAAATAT-A 418
|||||| |||||| ||| ||||||||||||||||| |||||||||||||||||||||| |
Sbjct 3616 CCACCTGTCTTCATAATCGTGTTAGAATGGGAGAAGAGTGAAACTGAAAAAGAAATATCA 3675
Query 419 TGAAACAACAATGGCTTTGGACTGGGAGATAGATTTCAGCAG-ACTGTACGAAGGCTTAG 477
|||||||||| |||||| |||||||||||||| ||||||| | |||||||||| || |
Sbjct 3676 -GAAACAACAAAGGCTTTATACTGGGAGATAGATATCAGCAGGA-TGTACGAAGGATT-G 3732
Query 478 AA-CCGAAA-ACTAACTACCGGCTTGTGTCAATGGATG-TTG 516
|| || ||| ||||| ||||||||||||||||||| || |||
Sbjct 3733 AAACC-AAACACTAAGTACCGGCTTGTGTCAATGGTTGGTTG 3773
> AT5G51530.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related
protein | chr5:20927118-20931502 REVERSE LENGTH=3450
Length=3450
Score = 553 bits (299), Expect = 8e-157
Identities = 430/492 (87%), Gaps = 13/492 (3%)
Strand=Plus/Plus
Query 32 TGCTGCTGAGGTTCTTGTAGCCATCCTTGAGTTTTGGCATTGCTGGAAGA-ATGC-TGAA 89
|||||||||||| ||||||||||| |||||||||||||||||||||| | || | |||
Sbjct 2784 TGCTGCTGAGGTAGTTGTAGCCATCTTTGAGTTTTGGCATTGCTGGAA-ATAT-CGAGAA 2841
Query 90 AGAGAAAGCTTGGTAACTCGCCTTTTTACGTTGGAGGAAAATGAAAGAATGAGTTGTAGA 149
||||| || ||||||||||||||||| || |||||||||||||||||||||||||||| |
Sbjct 2842 AGAGAGAGTTTGGTAACTCGCCTTTTCACCTTGGAGGAAAATGAAAGAATGAGTTGTATA 2901
Query 150 AAGTGCAGAAAGAAA-CTAAATTACCCGGAGCAAAGTTCTTATGGTATTGTTATGGCTGC 208
|| ||||||| | | |||||| || |||||| ||||| |||| |||||| |||||||
Sbjct 2902 AAATGCAGAA-GTCGGCCAAATTATCCAGAGCAACGTTCTCATGGCATTGTTGTGGCTGC 2960
Query 209 AGATTCAATCAGAGACTTGAAGTGTGGTCTTGGGTATATTGA-GTTTGTGGATATCTTTA 267
||||||||| |||||| ||||||||| ||| || |||| || ||||||||||||| |||
Sbjct 2961 AGATTCAATTAGAGACCTGAAGTGTGCTCTCGGAAATAT-GAAGTTTGTGGATATCCTTA 3019
Query 268 AGGTGATCCGCATGGAATGTAAAATGTTATGTGACATTAAAACCGGAGGCTGTGGAATAA 327
|||||| ||||||||||| ||||||||||||||||| || | | ||||| ||||||| |
Sbjct 3020 AGGTGACCCGCATGGAATATAAAATGTTATGTGACACTAGATCAGGAGGATGTGGAAGGA 3079
Query 328 CAAACT-TTATTCATCACATTATAAGTAAATGCCCACCTATCTTCACAATTGTGTTAGAA 386
|||| | || ||||||| |||||||||| |||||| || ||||||||||| |||||||||
Sbjct 3080 CAAA-TATTGTTCATCATATTATAAGTAGATGCCCGCCAATCTTCACAATCGTGTTAGAA 3138
Query 387 TGGGAGAAAAGTGAAACTGAAAAAGAAATATATGAAACAACAATGGCTTTGGACTGGGAG 446
|||||||| |||||||||||||||||||||| ||||||||||| ||||||||| ||||||
Sbjct 3139 TGGGAGAAGAGTGAAACTGAAAAAGAAATATCTGAAACAACAAAGGCTTTGGAGTGGGAG 3198
Query 447 ATAGATTTCAGCAGACTGTACGAAGGCTTAGAACCGAAA-ACTAACTACCGGCTTGTGTC 505
|||||| ||||||| |||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 3199 ATAGATATCAGCAGGCTGTACGAAGGCTTAGAACC-AAACACTAACTACCGGCTTGTGTC 3257
Query 506 AATGGATG-TTG 516
||||| || |||
Sbjct 3258 AATGGTTGGTTG 3269
> AT1G52430.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related
protein | chr1:19531350-19535955 REVERSE LENGTH=3411
Length=3411
Score = 549 bits (297), Expect = 1e-155
Identities = 448/519 (86%), Gaps = 18/519 (3%)
Strand=Plus/Plus
Query 1 CCCTAGAAGAAGTTATTTCCATGTCGAGTGGTGCTGCTGAGGTTCTTGTAGCCATCCTTG 60
|||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||
Sbjct 2636 CCCTAGAAGAAGTTATTTCCATGTCGAGTGATGCTGCTAAGGTAGTTGTAGCCATCCTTG 2695
Query 61 AGTTTTGGCATTGCTGGAAGAATGCTGAAAGAGAAAGCTTGGTAACTCGCCTTTTTACGT 120
|||||||| ||||||||| ||| | ||| ||||||||||||||||||||||||||||||
Sbjct 2696 AGTTTTGGTGTTGCTGGAAAAATCCAGAAGGAGAAAGCTTGGTAACTCGCCTTTTTACGT 2755
Query 121 TGGAGGAAAATGAAAGAATGAGTTGTAGAAAGTGCAGAAAGAA-ACTAAATTACCCGGAG 179
||| ||||||||||||||||||||||||||| |||||| || || |||||| || |||
Sbjct 2756 TGGCGGAAAATGAAAGAATGAGTTGTAGAAAATGCAGATGGATTAC-AAATTATCCAGAG 2814
Query 180 CAAAGTTCTTATGGTATTGTTATGGCTGCAGATTCAATCAGAGA-CTTGAAGTGTGGTCT 238
|||||||||||| ||||||||| ||||||||||||||||| | ||| ||||||| | |
Sbjct 2815 AAAAGTTCTTATGCCATTGTTATGCCTGCAGATTCAATCAGACAACTT-AAGTGTGCTTT 2873
Query 239 TGGGTA-TATTGA-GTTTGTGGATAT-CTTTAAGGTGATCCGCATGGAATGT-AAAATGT 294
|| | | ||| || ||||||||| || || ||| ||||||||||||||| | |||| ||
Sbjct 2874 TGAG-AGTAT-GAAGTTTGTGGACATACTAAAAG-TGATCCGCATGGAATATCAAAA-GT 2929
Query 295 TATGTGACATTAAAACCGGAGGCTGTGGA-A-TAACAAACTTTATTCATCACATTATAAG 352
||| |||||||||| ||||| |||||| | | |||||||| |||||||| |||||||
Sbjct 2930 CATGCAACATTAAAACAGGAGGTTGTGGAGAGT--CAAACTTTGTTCATCACTTTATAAG 2987
Query 353 TAAATGCCCACCTATCTTCACAATTGTGTTAGAATGGGAGAAAAGTGAAACTGAAAAAGA 412
|| |||||| ||| ||||||||||||| || ||||||||||| ||||||||||| |||||
Sbjct 2988 TAGATGCCCGCCTGTCTTCACAATTGTCTTGGAATGGGAGAAGAGTGAAACTGAGAAAGA 3047
Query 413 AATATATGAAACAACAATGGCTTTGGACTGGGAGATAGATTTCAGCAGACTGTACGAAGG 472
||||| ||||||||||| |||||| |||| |||| ||||| ||||||| || |||| |||
Sbjct 3048 AATATCTGAAACAACAAAGGCTTTAGACTTGGAGTTAGATATCAGCAGGCTATACGTAGG 3107
Query 473 CTTAGAACCGAAA-ACTAACTACCGGCTTGTGTCAATGG 510
||||||||| ||| |||||||||||||| ||||||||||
Sbjct 3108 CTTAGAACC-AAACACTAACTACCGGCTGGTGTCAATGG 3145
> AT1G52450.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related
protein | chr1:19541684-19546266 REVERSE LENGTH=3411
Length=3411
Score = 538 bits (291), Expect = 2e-152
Identities = 451/526 (86%), Gaps = 19/526 (4%)
Strand=Plus/Plus
Query 1 CCCTAGAAGAAGTTATTTCCATGTCGAGTGGTGCTGCTGAGGTTCTTGTAGCCATCCTTG 60
||||||||||||||||||||| |||||||| ||||||| |||| |||||||||||||||
Sbjct 2636 CCCTAGAAGAAGTTATTTCCAAGTCGAGTGATGCTGCTAAGGTAGTTGTAGCCATCCTTG 2695
Query 61 AGTTTTGGCATTGCTGGAAGAATGCTGAAAGAGAAAGCTTGGTAACTCGCCTTTTTACGT 120
|||||||| ||||||||| ||| | ||| ||||||||||||||||||||||||||||||
Sbjct 2696 AGTTTTGGTTTTGCTGGAAAAATCCAGAAGGAGAAAGCTTGGTAACTCGCCTTTTTACGT 2755
Query 121 TGGAGGAAAATGAAAGAATGAGTTGTAGAAAGTGCAGAAAGAA-ACTAAATTACCCGGAG 179
||| ||||||||||||||||||||| ||||| |||||| || || |||||| || |||
Sbjct 2756 TGGCGGAAAATGAAAGAATGAGTTGCAGAAAATGCAGATGGATTAC-AAATTATCCAGAG 2814
Query 180 CAAAGTTCTTATGGTATTGTTATGGCTGCAGATTCAATCAGAGA-CTTGAAGTGTGGTCT 238
||||||||||| ||||||||| ||||||||||||||||| | ||| ||||||| | |
Sbjct 2815 AAAAGTTCTTATACCATTGTTATGCCTGCAGATTCAATCAGACAACTT-AAGTGTGCTTT 2873
Query 239 TGGGTA-TATTGA-GTTTGTGGATAT-CTTTAAGGTGATCCGCATGGAATGT-AAAATGT 294
|| | | ||| || ||||||||| || || ||| ||||||||||||||| | |||| ||
Sbjct 2874 TGAG-AGTAT-GAAGTTTGTGGACATACTAAAAG-TGATCCGCATGGAATATCAAAA-GT 2929
Query 295 TATGTGACATTAAAACCGGAGGCTGTGGA-A-TAACAAACTTTATTCATCACATTATAAG 352
||| ||||||||||| ||||| |||||| | | |||||||| |||||||| |||||||
Sbjct 2930 CATGCGACATTAAAACAGGAGGTTGTGGAGAGT--CAAACTTTGTTCATCACTTTATAAG 2987
Query 353 TAAATGCCCACCTATCTTCACAATTGTGTTAGAATGGGAGAAAAGTGAAACTGAAAAAGA 412
|| |||||| ||| ||||||||||||| || ||||||||||| ||||||||||| |||||
Sbjct 2988 TAGATGCCCGCCTGTCTTCACAATTGTCTTGGAATGGGAGAAGAGTGAAACTGAGAAAGA 3047
Query 413 AATATATGAAACAACAATGGCTTTGGACTGGGAGATAGATTTCAGCAGACTGTACGAAGG 472
||||| ||||||||||| |||||| |||| |||| ||||| ||||||| || |||| |||
Sbjct 3048 AATATCTGAAACAACAAAGGCTTTAGACTTGGAGTTAGATATCAGCAGGCTATACGTAGG 3107
Query 473 CTTAGAACCGAAA-ACTAACTACCGGCTTGTGTCAATGGATG-TTG 516
||||||||| ||| |||||||||||||| |||||||||| || |||
Sbjct 3108 CTTAGAACC-AAACACTAACTACCGGCTGGTGTCAATGGTTGGTTG 3152
> AT1G65130.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related
protein | chr1:24196472-24201022 REVERSE LENGTH=3240
Length=3240
Score = 520 bits (281), Expect = 9e-147
Identities = 444/520 (85%), Gaps = 22/520 (4%)
Strand=Plus/Plus
Query 1 CCCTAGAAGAAGTT-ATTTCCATGTCGAGTGGTGCTGCTGAGGTTCTTGTAGCCATCCTT 59
||||||||||| || | |||| |||| ||| |||||||||||| ||||| || |||||
Sbjct 2555 CCCTAGAAGAACTTCA-TTCCCTGTCAAGTAATGCTGCTGAGGTACTTGTTGCAATCCTC 2613
Query 60 GAGTTTTGGCATTGCTGGAAGAA-TGCTGAAAGAGAAAGCTTGGTAACTCGCCTTTTTAC 118
|||||||| ||||||||||| || | | ||||| ||||||||||||||||||||||||||
Sbjct 2614 GAGTTTTGTCATTGCTGGAA-AAGTCCAGAAAGTGAAAGCTTGGTAACTCGCCTTTTTAC 2672
Query 119 GTTGGAGGAAAATGAAAGAATGAGTTGTAGAAAGTGCAGAAAGAAACTAAATTACCCGGA 178
||||||||| |||||||||||||||||||||| ||||||| ||| | |||||| || ||
Sbjct 2673 ATTGGAGGAATATGAAAGAATGAGTTGTAGAAAATGCAGAAGGAAGCCAAATTATCCAGA 2732
Query 179 GCAAAGTTCTTATGGTATTGTTATGGCTGCAGATTCAATCAGAGACTT-GAAGTGTGGTC 237
||||||||||||||| |||||||||||||||||||||||||||||| | || ||||| |
Sbjct 2733 GCAAAGTTCTTATGGAATTGTTATGGCTGCAGATTCAATCAGAGACCTAGA-GTGTGCT- 2790
Query 238 TTGGGTA-TATTGA-GTTTGTGGATATCTTTAAGGTGATCCGCATGGA-A-TGTAAAATG 293
||||| | ||| | ||||| ||| | | |||| || ||||||||| | | || ||| ||
Sbjct 2791 TTGGGGAATATA-ATGTTTGAGGACACCCTTAAAGTAATCCGCATGAACAATG-AAA-TG 2847
Query 294 TTATGTGACATTAAAACCGGAGGCTGTGGA-ATAACAAACTTTATTCATCACATTATAAG 352
||||||| || ||| |||||||||||| | | |||| || |||| |||| ||||||
Sbjct 2848 ATATGTGATGTTGGAACAGGAGGCTGTGGAGAGAG-AAACCTTGTTCACCACACTATAAG 2906
Query 353 TAAATGCCCACCTATCTTCACAATTGTGTTAGAATGGGAGAA-AAGTGAAACTGAAAAAG 411
|| |||||| |||||||||||||||||||| ||||||||||| || ||||||||||| ||
Sbjct 2907 TAGATGCCCGCCTATCTTCACAATTGTGTTGGAATGGGAGAAGAA-TGAAACTGAAATAG 2965
Query 412 AAATATATGAAACAACAA-TGGCTTTGGACTGGGAGATAGATTTCAGCAGACTGTACGAA 470
|||||||||||||||||| || ||||| |||||||||||||| ||||||| | ||||||
Sbjct 2966 AAATATATGAAACAACAAATG-CTTTGCACTGGGAGATAGATATCAGCAGGTTATACGAA 3024
Query 471 GGCTTAGAACCGAAA-ACTAACTACCGGCTTGTGTCAATG 509
||||||||||| ||| ||||||||||||||||||||||||
Sbjct 3025 GGCTTAGAACC-AAACACTAACTACCGGCTTGTGTCAATG 3063
> AT1G65110.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related
protein | chr1:24183959-24188330 REVERSE LENGTH=3285
Length=3285
Score = 472 bits (255), Expect = 2e-132
Identities = 435/520 (84%), Gaps = 19/520 (4%)
Strand=Plus/Plus
Query 1 CCCTAGAAGAAGTT-ATTTCCATGTCGAGTGGTGCTGCTGAGGTTCTTGTAGCCATCCTT 59
||||||||| |||| | ||||||||| |||| ||| ||||| || |||| || || ||
Sbjct 2534 CCCTAGAAGGAGTTCA-TTCCATGTCAAGTGATGCCGCTGACGTAGTTGTCGCGATTCTC 2592
Query 60 GAGTTTTGGCATTGCTGGAAGAA-TGCTGAAAGAGAAAGCTTGGTAACTCGCCTTTTTAC 118
||||||| ||||||||||| || | | ||||||||||||||||||||||||||||||||
Sbjct 2593 GAGTTTTTTCATTGCTGGAA-AAGTCCAGAAAGAGAAAGCTTGGTAACTCGCCTTTTTAC 2651
Query 119 GTTGGAGGAAAATGAAAGAATGAGTTGTAGAAAGTGCAGAAAGAAA-CTAAATTACCCGG 177
||||| |||| |||||||||||||||||| ||| |||| |||| || | |||||| || |
Sbjct 2652 GTTGGCGGAATATGAAAGAATGAGTTGTAAAAAATGCA-AAAGGAAGCCAAATTATCCAG 2710
Query 178 AGCAAAGTTCTTATGGTATTGTTATGGCTGCAGATTCAATCAGAGACTTGAAGTGTGGTC 237
|||||||||||||||| ||||||||||||||| ||||||||||| || ||||||||| |
Sbjct 2711 AGCAAAGTTCTTATGGAATTGTTATGGCTGCAAATTCAATCAGAAACCTGAAGTGTGCTT 2770
Query 238 TTGGGTATATTGAGTTTGTGGATATCTTTAAGGTGATCCGCATGGAATG-TAAAATGTTA 296
||||| |||| |||||| ||| ||| | || || ||||||| || | | |||| ||
Sbjct 2771 TTGGGAATATAAAGTTTGAGGACATCCTCAAAATGGGCCGCATGAAA-GATGGAATGATA 2829
Query 297 TGTGACATTAAAACCGGAGGCTGTGGA-ATAACAAACTTTATTCATCACATTATAAGTAA 355
||||| ||||||| || ||||||||| ||| ||||||| |||| || | ||||||||
Sbjct 2830 TGTGATGTTAAAACAGGTGGCTGTGGAGATAT-AAACTTTGTTCACCATACTATAAGTAG 2888
Query 356 ATGCCCACCTATCTTCACAATTGTGTTAGAATGGGAGAA-AAGTGAAACTGAAAAAGAAA 414
|||||| |||||||||||||||||||| ||||||| ||| || ||||||||||||||| |
Sbjct 2889 ATGCCCGCCTATCTTCACAATTGTGTTGGAATGGGTGAAGAA-TGAAACTGAAAAAGATA 2947
Query 415 TATATGAAACAACAATGGCTTTGGACTGGGAGATAGATTTCAGCAGACTGTACGAAGGCT 474
||| ||||||||||| ||| |||||||||||||||||| ||||||| | ||||||||||
Sbjct 2948 TATCTGAAACAACAAAGGCATTGGACTGGGAGATAGATATCAGCAGGGTATACGAAGGCT 3007
Query 475 TAGAACCGAA--AA-C-T-AACTACCGGCTTGTGTCAATG 509
||||| ||| || | | || ||||||||||||||||||
Sbjct 3008 TAGAA--GAATCAAACATTAAGTACCGGCTTGTGTCAATG 3045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30140488200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5