BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933291

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G27580.1 | Symbols:  | A20/AN1-like zinc finger family prote...   614    3e-175


> AT2G27580.1 | Symbols:  | A20/AN1-like zinc finger family protein 
| chr2:11776411-11777529 REVERSE LENGTH=1002
Length=1002

 Score =  614 bits (332),  Expect = 3e-175
 Identities = 466/527 (88%), Gaps = 23/527 (4%)
 Strand=Plus/Plus

Query  22   GTTATGGCGGAAGAACACAGGCTTCAAGAACCACGATTATGTGCTAAGAATTGTGGTTTC  81
            |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct  279  GTTATGGCGGAAGAACACAGACTTCAAGAACCACGATTATGTGCTAACAATTGTGGCTTC  338

Query  82   TTTGGAAGCACCGCTACACAAAATCTTTGTTCTAAATG-TTTCAGAGATGTTCAACATCA  140
            || |||||||| |||||||||||||| ||||| ||||| |||| ||||| ||||||||||
Sbjct  339  TTCGGAAGCACAGCTACACAAAATCTCTGTTCCAAATGTTTTC-GAGATCTTCAACATCA  397

Query  141  AGAACAAAACTCTTCCACCGCTAAACACGCTCTTAACCAAACCTTAGCCGCCGTTTCTAC  200
            ||||||||||||||||||||| ||||| ||||||| |||| ||||||||||||    |  
Sbjct  398  AGAACAAAACTCTTCCACCGCCAAACATGCTCTTACCCAATCCTTAGCCGCCG----T--  451

Query  201  AGGTGGCGGTACCGCGTCCTCCTCCGTAT---CA---CCACCGCCTCAAGCTGATTCGAA  254
               ||||| | | ||||| |||||||| |   ||   || ||||||| ||||||||||||
Sbjct  452  ---TGGCGCTGCTGCGTCTTCCTCCGTGTCGCCACCGCCTCCGCCTCCAGCTGATTCGAA  508

Query  255  AGAAATCGTCGAAGCGAATTCGA-AGAAACGAGCGGCGGCTGAGGAGGAGGAAGCGG--C  311
            ||||||||| |||||||| || | |||||||||||||||||||   |||||| ||||   
Sbjct  509  AGAAATCGTTGAAGCGAAATC-AGAGAAACGAGCGGCGGCTGAACCGGAGGAGGCGGATG  567

Query  312  G-CCGTCGCAAGATCCGAAGCGGTGTTTGACTTGTCGGCGGCGGGTGGGAATAACGGGGT  370
            | ||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct  568  GTCCGCCGCAAGATCCGAAGCGGTGTTTGACTTGTCGGCGGCGCGTGGGAATCACGGGGT  627

Query  371  TTCGGTGTAGGTGTGGCTTCGTTTTCTGTGGGACACATAGGTACGCGGAGCTGCATGAAT  430
            |||||||||||||||| ||||||||||| ||||| ||||||||||||||||  |||||||
Sbjct  628  TTCGGTGTAGGTGTGGTTTCGTTTTCTGCGGGACGCATAGGTACGCGGAGCAACATGAAT  687

Query  431  GTTCGTTTGATTTCAAGAGGATTGGGAAGGATAAGATCGCTAAGGCGAATCCGATTGTGA  490
            ||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||
Sbjct  688  GTTCGTTTGATTTCAAGCGGATGGGGAAGGATAAGATCGCTAAAGCGAATCCGATTGTGA  747

Query  491  AAGCTGATAAGCTTGAGAAGATTTGAgtttgttgtttgttgtt-gtt  536
            |||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct  748  AAGCTGATAAGCTTGAGAAGATTTGACTTTGTTGTTTGTTGTTTGTT  794



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25669649117


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5