BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg933293 Length=1110 Score E Sequences producing significant alignments: (Bits) Value AT3G20370.1 | Symbols: | TRAF-like family protein | chr3:71053... 808 0.0 AT3G20380.1 | Symbols: | TRAF-like family protein | chr3:71080... 377 1e-103 > AT3G20370.1 | Symbols: | TRAF-like family protein | chr3:7105371-7107225 FORWARD LENGTH=1396 Length=1396 Score = 808 bits (437), Expect = 0.0 Identities = 666/775 (86%), Gaps = 22/775 (3%) Strand=Plus/Plus Query 337 GTTCAGGATACCTTTCGCTTTATGTAGCTATAGATAAATCAACCCCCATCGCTGCACAAA 396 ||||||| |||||||| ||||| ||||| ||||| || |||| | | ||| | ||| Sbjct 508 GTTCAGGGTACCTTTCTCTTTACGTAGCCATAGACAACTCAA--CTC-TCG--G-ACAGC 561 Query 397 AAGAGATTTACGCGGATCTAAGGTTTTATATCTTCAACAAGAACGAGAGGAAGTACTTGA 456 ||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||| | Sbjct 562 AAGAGATTTACGCAGATCTAAGGTTTTACATCTTTAACAAGAATGAGAGGAAGTACTTCA 621 Query 457 CCATACAAGATACCGATATATGGAAATTTAATGTCTTCAAGACGATGTGGGGATTCTCTC 516 | || |||||||||||| | ||||| |||| ||||||||| ||||||||||||||||||| Sbjct 622 CTATCCAAGATACCGATGTGTGGAAGTTTAGTGTCTTCAAAACGATGTGGGGATTCTCTC 681 Query 517 AAGTCCTGACCATTGATACATTCAAAAACCCGACAAACGGATACT-TATACGATGGAGAT 575 | ||||| ||||||||||||||||| | |||||||| ||||| | | |||||||||||| Sbjct 682 AGGTCCTCCCCATTGATACATTCAAAGATCCGACAAAAGGATA-TCTCTACGATGGAGAT 740 Query 576 CACTGCGAGTTTGGTGTTGATGTGACCATTCCTCCTCTCTACGAAAAATCGGAATTTTTC 635 ||||||||||||||||||||||| ||||| ||| |||||||||||||||||||| ||||| Sbjct 741 CACTGCGAGTTTGGTGTTGATGTAACCATGCCTTCTCTCTACGAAAAATCGGAACTTTTC 800 Query 636 TCTGTCACAGAGAATTTCCATAAC-CCGAGATTCACCTGGACCATTCAGAGATTCTCTAT 694 ||||||||||||||||| | ||| |||||||||||||||||||||| | ||||||||| Sbjct 801 TCTGTCACAGAGAATTTTC-TAAATCCGAGATTCACCTGGACCATTCGGGGATTCTCTAC 859 Query 695 GCTGCTGAAAGACATTTACCTATCAGATA-TGTTCTACATCAGAGTAAGAAATTGGAATA 753 |||||| ||| ||| |||||||||||| | |||||| |||| ||| ||||| |||||||| Sbjct 860 GCTGCTAAAAAACAGTTACCTATCAGA-AGTGTTCTCCATCGGAGGAAGAAGTTGGAATA 918 Query 754 TACAAGTGAATCCAAATGGTCGTGCCACGGGAGAGGGAAAAGCCTTGTCGATGTATCTTA 813 ||||| | ||||||| ||||| || ||||||||||||||||| ||||||||||||||| Sbjct 919 TACAAATCAATCCAAGTGGTCTTGGTACGGGAGAGGGAAAAGCTTTGTCGATGTATCTTG 978 Query 814 ATCTTAATGTGAATGAGAAATTCAAACCCTATGAGAAGATTTACGTTCGAGCCAAGCTTC 873 |||||||||||||||| ||||| ||| |||||||||||||| |||||||||||||||| Sbjct 979 GCCTTAATGTGAATGAGATATTCAGACCATATGAGAAGATTTATGTTCGAGCCAAGCTTC 1038 Query 874 GAGTTCTTAACCAACGCAATCTCAATAACTTGGAGAGGCCACTCGATAATTGGTTCATTG 933 ||| ||||||||||| |||||||| |||| | || ||| |||||||| ||||| || || Sbjct 1039 GAGCTCTTAACCAACTCAATCTCAGTAACATCGAAAGGGAACTCGATATTTGGTACAATG 1098 Query 934 GTCCGGAATATGGA-AATGAACATGCTTGGGGTTATCA-TGAGTTTATCTCTTTCTCAGA 991 |||||| ||||||| ||| | | ||| |||||| || ||||||||||| |||| | | Sbjct 1099 GTCCGGGATATGGAGAAT-AT-A-GCT-GGGGTT-TCCCTGAGTTTATCTATTTCCCTTA 1153 Query 992 CCTTAGAGATTCATCAAAGGGTTTCGTTGTGAACGATGTGTTAAAGGTTCAAGTCGAAAT 1051 || | |||||||||||||||||||||| |||||||||||| | ||||||||| ||||| Sbjct 1154 TCTCACAGATTCATCAAAGGGTTTCGTTAAGAACGATGTGTTGATGGTTCAAGTTGAAAT 1213 Query 1052 GGAGGCCATTTCTTCAACCAAGTACTCCCCCTAGTTAGATTT-CTC-AAGCCAAG 1104 |||||||||||||||||||||||||| ||| |||||||||| ||| |||| ||| Sbjct 1214 GGAGGCCATTTCTTCAACCAAGTACTTCCCG-AGTTAGATTTTCTCTAAGCAAAG 1267 Score = 209 bits (113), Expect = 4e-53 Identities = 166/190 (87%), Gaps = 9/190 (5%) Strand=Plus/Plus Query 148 ATTACTTAC-ACAAAA-AA-GAGAACTCATCACGTGATTATAAAGTCA-CAGCTTCAAAC 203 ||||||||| | |||| || |||| ||||||||||||||||||||| | ||||||||||| Sbjct 277 ATTACTTACAAGAAAATAAGGAGATCTCATCACGTGATTATAAAGT-ATCAGCTTCAAAC 335 Query 204 GTAGTGAAGGGTCTGAGAGATCGTCCTCCATCTTCTTACTCTATGAAGATGGAGTCTTTC 263 | |||||| ||| ||||||||||||||||||| ||||||||| | ||||||||||||||| Sbjct 336 GCAGTGAAAGGTTTGAGAGATCGTCCTCCATCGTCTTACTCTCTCAAGATGGAGTCTTTC 395 Query 264 AACACGCTCCTTAAGTCAGCT-A-ACGCACAAGGATACGAATCTCGTCCTTTTTCCGTTG 321 |||||||||||||||||| || | ||| | || ||| | ||||||||| ||||| |||| Sbjct 396 AACACGCTCCTTAAGTCAACTTACACGGAGAA--ATATGTATCTCGTCCCTTTTCAGTTG 453 Query 322 GTGGATACAA 331 |||||||||| Sbjct 454 GTGGATACAA 463 > AT3G20380.1 | Symbols: | TRAF-like family protein | chr3:7108097-7109914 FORWARD LENGTH=1358 Length=1358 Score = 377 bits (204), Expect = 1e-103 Identities = 599/781 (77%), Gaps = 62/781 (8%) Strand=Plus/Plus Query 338 TTCAGGATACCTTTCGCTTTATGTAGCT-ATAGATAAATCAACCCCCATCGCTGCACAAA 396 |||||||||| |||||||||| ||| || || | |||| ||||||||| ||||| | Sbjct 485 TTCAGGATACGTTTCGCTTTACGTA-CTCTTACACGAATCGACCCCCATCACTGCAGATC 543 Query 397 AAG-AGATTTACGCGGATCTAAGGTTTTATATCTTCAACAAGAACGAGAGGAAGTACTTG 455 ||| | |||||||||||||||||||||| |||||||| || ||||||| ||||||||| Sbjct 544 AAGTCG-TTTACGCGGATCTAAGGTTTTACATCTTCAATAACAACGAGAAGAAGTACTTT 602 Query 456 ACCATACAAGATACCGATATATGGAAATTTAATGTC-TTCAAGACGATGTGGGGATTCTC 514 ||| | ||||||||| | |||||||||||| || | ||| | | | | ||||||| | Sbjct 603 ACCGTCCAAGATACCAACGTATGGAAATTTACTG-CACCCAAAAGGCTTTTGGGATTCCC 661 Query 515 TCAA-GTCCTGAC--CATTGATAC-ATTCAAAAACCCGAC-AAACGGATACTTATACGAT 569 | || ||| || | || ||| | |||| || ||| | | |||||||||| | |||||| Sbjct 662 T-AAGGTCATGTCTGCA--GAT-CAATTCGAAGACCTG-CGAAACGGATACATCTACGAT 716 Query 570 GGAGATCACTGCGAGTTTGGTGTTGATGTGACCATTCCTCCTCTCTACGAAAAATCGGAA 629 | ||||||| ||||||||||||||||||||| || || ||| |||| ||||||| ||| Sbjct 717 --A-ATCACTGTGAGTTTGGTGTTGATGTGACCGTTGCTTCTCACTACCAAAAATCTGAA 773 Query 630 TTTTTCTCTGTCACAGAGAATTTCCATAACCCGAGATTCACCTGGA-CCA-TTCAGAGAT 687 | ||| | |||||| ||||| ||| ||||||| | ||||| || | || | | ||||| Sbjct 774 TCTTTATTTGTCACTGAGAAATTCGATAACCCAATATTCA-CT-TATGCACTCCTGAGAT 831 Query 688 TCTCTATGCTGCTGAAAGACATTTACCTATCAGATATGTTCTACATCAGAGTAAGAA--A 745 |||| | |||||| ||||| | ||||| ||| ||| |||||| ||| ||| ||||| | Sbjct 832 TCTCGACGCTGCTCAAAGAAAGTTACCAATCCGATGTGTTCTCCATTGGAGGAAGAAGCA 891 Query 746 TTGGAATATACAAGTGAATCCAAATGGTCGTGCCA-C-GGGAGAGGGAAAAGCCTTGTCG 803 | | || |||||||| ||| ||||||||| | | | ||||||||||| ||||| Sbjct 892 -T-GTATTTACAAGTGTTTCCGAATGGTCGT--AATCTTTCAAAGGGAAAAGCCATGTCG 947 Query 804 ATGTATCTTAATCTTAATGTGAATGAGAAATTCAAACCCTATGAGAAGATTTACGTTCGA 863 |||||||||| | || | || || ||||||||||||| ||||| |||||| |||||| Sbjct 948 CTGTATCTTAA-C---AT-T-AACGATAAATTCAAACCCTTTGAGATGATTTATGTTCGA 1001 Query 864 GCCAAGCTTCGAGTTCTTAACCAACGCAATCTCAATAACTTGGAGAGGCCACTC-GATAA 922 ||||||||||||||||||||||||||||| ||||||||| | || | | | | | ||| Sbjct 1002 GCCAAGCTTCGAGTTCTTAACCAACGCAAACTCAATAACGTCGAAATACAAGTTAG-TAA 1060 Query 923 TTGGTTCA-TTGGTCCGGAATATGGAAATGAACATGCTTGGG-G--TTATCATGAGTTTA 978 ||||| || || | || | | | | | | | | ||| | || ||| || || | Sbjct 1061 TTGGTACACTTCTT--GGTTT-T--AT-T-A-C-T-C--GGGCGACTT-TCA-GA-TT-A 1104 Query 979 TCTCTTTCTCAGACCTTAGAGATTCATCAAAGGGTTTCGTTGTGAACGATGTGTTAAAGG 1038 || || | | || || |||||||||||||||||||| |||||||| ||| |||| |||| Sbjct 1105 TCCCTCTAGCTGATCTCAGAGATTCATCAAAGGGTTTTGTTGTGAATGATATGTTGAAGG 1164 Query 1039 TTCAAGT-CGAAATGGAGGCCATTTCTTCAACCAAGTACTCCCCCTAGTTAGATTTCTCA 1097 || |||| | || | |||| |||||| |||||||||| | ||| ||||||||||||||| Sbjct 1165 TTGAAGTTC-AACTCGAGGGCATTTCCTCAACCAAGTGGTACCC-TAGTTAGATTTCTCA 1222 Query 1098 A 1098 | Sbjct 1223 A 1223 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54417390780 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5