BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933293
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20370.1 | Symbols: | TRAF-like family protein | chr3:71053... 808 0.0
AT3G20380.1 | Symbols: | TRAF-like family protein | chr3:71080... 377 1e-103
> AT3G20370.1 | Symbols: | TRAF-like family protein | chr3:7105371-7107225
FORWARD LENGTH=1396
Length=1396
Score = 808 bits (437), Expect = 0.0
Identities = 666/775 (86%), Gaps = 22/775 (3%)
Strand=Plus/Plus
Query 337 GTTCAGGATACCTTTCGCTTTATGTAGCTATAGATAAATCAACCCCCATCGCTGCACAAA 396
||||||| |||||||| ||||| ||||| ||||| || |||| | | ||| | |||
Sbjct 508 GTTCAGGGTACCTTTCTCTTTACGTAGCCATAGACAACTCAA--CTC-TCG--G-ACAGC 561
Query 397 AAGAGATTTACGCGGATCTAAGGTTTTATATCTTCAACAAGAACGAGAGGAAGTACTTGA 456
||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||| |
Sbjct 562 AAGAGATTTACGCAGATCTAAGGTTTTACATCTTTAACAAGAATGAGAGGAAGTACTTCA 621
Query 457 CCATACAAGATACCGATATATGGAAATTTAATGTCTTCAAGACGATGTGGGGATTCTCTC 516
| || |||||||||||| | ||||| |||| ||||||||| |||||||||||||||||||
Sbjct 622 CTATCCAAGATACCGATGTGTGGAAGTTTAGTGTCTTCAAAACGATGTGGGGATTCTCTC 681
Query 517 AAGTCCTGACCATTGATACATTCAAAAACCCGACAAACGGATACT-TATACGATGGAGAT 575
| ||||| ||||||||||||||||| | |||||||| ||||| | | ||||||||||||
Sbjct 682 AGGTCCTCCCCATTGATACATTCAAAGATCCGACAAAAGGATA-TCTCTACGATGGAGAT 740
Query 576 CACTGCGAGTTTGGTGTTGATGTGACCATTCCTCCTCTCTACGAAAAATCGGAATTTTTC 635
||||||||||||||||||||||| ||||| ||| |||||||||||||||||||| |||||
Sbjct 741 CACTGCGAGTTTGGTGTTGATGTAACCATGCCTTCTCTCTACGAAAAATCGGAACTTTTC 800
Query 636 TCTGTCACAGAGAATTTCCATAAC-CCGAGATTCACCTGGACCATTCAGAGATTCTCTAT 694
||||||||||||||||| | ||| |||||||||||||||||||||| | |||||||||
Sbjct 801 TCTGTCACAGAGAATTTTC-TAAATCCGAGATTCACCTGGACCATTCGGGGATTCTCTAC 859
Query 695 GCTGCTGAAAGACATTTACCTATCAGATA-TGTTCTACATCAGAGTAAGAAATTGGAATA 753
|||||| ||| ||| |||||||||||| | |||||| |||| ||| ||||| ||||||||
Sbjct 860 GCTGCTAAAAAACAGTTACCTATCAGA-AGTGTTCTCCATCGGAGGAAGAAGTTGGAATA 918
Query 754 TACAAGTGAATCCAAATGGTCGTGCCACGGGAGAGGGAAAAGCCTTGTCGATGTATCTTA 813
||||| | ||||||| ||||| || ||||||||||||||||| |||||||||||||||
Sbjct 919 TACAAATCAATCCAAGTGGTCTTGGTACGGGAGAGGGAAAAGCTTTGTCGATGTATCTTG 978
Query 814 ATCTTAATGTGAATGAGAAATTCAAACCCTATGAGAAGATTTACGTTCGAGCCAAGCTTC 873
|||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||
Sbjct 979 GCCTTAATGTGAATGAGATATTCAGACCATATGAGAAGATTTATGTTCGAGCCAAGCTTC 1038
Query 874 GAGTTCTTAACCAACGCAATCTCAATAACTTGGAGAGGCCACTCGATAATTGGTTCATTG 933
||| ||||||||||| |||||||| |||| | || ||| |||||||| ||||| || ||
Sbjct 1039 GAGCTCTTAACCAACTCAATCTCAGTAACATCGAAAGGGAACTCGATATTTGGTACAATG 1098
Query 934 GTCCGGAATATGGA-AATGAACATGCTTGGGGTTATCA-TGAGTTTATCTCTTTCTCAGA 991
|||||| ||||||| ||| | | ||| |||||| || ||||||||||| |||| | |
Sbjct 1099 GTCCGGGATATGGAGAAT-AT-A-GCT-GGGGTT-TCCCTGAGTTTATCTATTTCCCTTA 1153
Query 992 CCTTAGAGATTCATCAAAGGGTTTCGTTGTGAACGATGTGTTAAAGGTTCAAGTCGAAAT 1051
|| | |||||||||||||||||||||| |||||||||||| | ||||||||| |||||
Sbjct 1154 TCTCACAGATTCATCAAAGGGTTTCGTTAAGAACGATGTGTTGATGGTTCAAGTTGAAAT 1213
Query 1052 GGAGGCCATTTCTTCAACCAAGTACTCCCCCTAGTTAGATTT-CTC-AAGCCAAG 1104
|||||||||||||||||||||||||| ||| |||||||||| ||| |||| |||
Sbjct 1214 GGAGGCCATTTCTTCAACCAAGTACTTCCCG-AGTTAGATTTTCTCTAAGCAAAG 1267
Score = 209 bits (113), Expect = 4e-53
Identities = 166/190 (87%), Gaps = 9/190 (5%)
Strand=Plus/Plus
Query 148 ATTACTTAC-ACAAAA-AA-GAGAACTCATCACGTGATTATAAAGTCA-CAGCTTCAAAC 203
||||||||| | |||| || |||| ||||||||||||||||||||| | |||||||||||
Sbjct 277 ATTACTTACAAGAAAATAAGGAGATCTCATCACGTGATTATAAAGT-ATCAGCTTCAAAC 335
Query 204 GTAGTGAAGGGTCTGAGAGATCGTCCTCCATCTTCTTACTCTATGAAGATGGAGTCTTTC 263
| |||||| ||| ||||||||||||||||||| ||||||||| | |||||||||||||||
Sbjct 336 GCAGTGAAAGGTTTGAGAGATCGTCCTCCATCGTCTTACTCTCTCAAGATGGAGTCTTTC 395
Query 264 AACACGCTCCTTAAGTCAGCT-A-ACGCACAAGGATACGAATCTCGTCCTTTTTCCGTTG 321
|||||||||||||||||| || | ||| | || ||| | ||||||||| ||||| ||||
Sbjct 396 AACACGCTCCTTAAGTCAACTTACACGGAGAA--ATATGTATCTCGTCCCTTTTCAGTTG 453
Query 322 GTGGATACAA 331
||||||||||
Sbjct 454 GTGGATACAA 463
> AT3G20380.1 | Symbols: | TRAF-like family protein | chr3:7108097-7109914
FORWARD LENGTH=1358
Length=1358
Score = 377 bits (204), Expect = 1e-103
Identities = 599/781 (77%), Gaps = 62/781 (8%)
Strand=Plus/Plus
Query 338 TTCAGGATACCTTTCGCTTTATGTAGCT-ATAGATAAATCAACCCCCATCGCTGCACAAA 396
|||||||||| |||||||||| ||| || || | |||| ||||||||| ||||| |
Sbjct 485 TTCAGGATACGTTTCGCTTTACGTA-CTCTTACACGAATCGACCCCCATCACTGCAGATC 543
Query 397 AAG-AGATTTACGCGGATCTAAGGTTTTATATCTTCAACAAGAACGAGAGGAAGTACTTG 455
||| | |||||||||||||||||||||| |||||||| || ||||||| |||||||||
Sbjct 544 AAGTCG-TTTACGCGGATCTAAGGTTTTACATCTTCAATAACAACGAGAAGAAGTACTTT 602
Query 456 ACCATACAAGATACCGATATATGGAAATTTAATGTC-TTCAAGACGATGTGGGGATTCTC 514
||| | ||||||||| | |||||||||||| || | ||| | | | | ||||||| |
Sbjct 603 ACCGTCCAAGATACCAACGTATGGAAATTTACTG-CACCCAAAAGGCTTTTGGGATTCCC 661
Query 515 TCAA-GTCCTGAC--CATTGATAC-ATTCAAAAACCCGAC-AAACGGATACTTATACGAT 569
| || ||| || | || ||| | |||| || ||| | | |||||||||| | ||||||
Sbjct 662 T-AAGGTCATGTCTGCA--GAT-CAATTCGAAGACCTG-CGAAACGGATACATCTACGAT 716
Query 570 GGAGATCACTGCGAGTTTGGTGTTGATGTGACCATTCCTCCTCTCTACGAAAAATCGGAA 629
| ||||||| ||||||||||||||||||||| || || ||| |||| ||||||| |||
Sbjct 717 --A-ATCACTGTGAGTTTGGTGTTGATGTGACCGTTGCTTCTCACTACCAAAAATCTGAA 773
Query 630 TTTTTCTCTGTCACAGAGAATTTCCATAACCCGAGATTCACCTGGA-CCA-TTCAGAGAT 687
| ||| | |||||| ||||| ||| ||||||| | ||||| || | || | | |||||
Sbjct 774 TCTTTATTTGTCACTGAGAAATTCGATAACCCAATATTCA-CT-TATGCACTCCTGAGAT 831
Query 688 TCTCTATGCTGCTGAAAGACATTTACCTATCAGATATGTTCTACATCAGAGTAAGAA--A 745
|||| | |||||| ||||| | ||||| ||| ||| |||||| ||| ||| ||||| |
Sbjct 832 TCTCGACGCTGCTCAAAGAAAGTTACCAATCCGATGTGTTCTCCATTGGAGGAAGAAGCA 891
Query 746 TTGGAATATACAAGTGAATCCAAATGGTCGTGCCA-C-GGGAGAGGGAAAAGCCTTGTCG 803
| | || |||||||| ||| ||||||||| | | | ||||||||||| |||||
Sbjct 892 -T-GTATTTACAAGTGTTTCCGAATGGTCGT--AATCTTTCAAAGGGAAAAGCCATGTCG 947
Query 804 ATGTATCTTAATCTTAATGTGAATGAGAAATTCAAACCCTATGAGAAGATTTACGTTCGA 863
|||||||||| | || | || || ||||||||||||| ||||| |||||| ||||||
Sbjct 948 CTGTATCTTAA-C---AT-T-AACGATAAATTCAAACCCTTTGAGATGATTTATGTTCGA 1001
Query 864 GCCAAGCTTCGAGTTCTTAACCAACGCAATCTCAATAACTTGGAGAGGCCACTC-GATAA 922
||||||||||||||||||||||||||||| ||||||||| | || | | | | | |||
Sbjct 1002 GCCAAGCTTCGAGTTCTTAACCAACGCAAACTCAATAACGTCGAAATACAAGTTAG-TAA 1060
Query 923 TTGGTTCA-TTGGTCCGGAATATGGAAATGAACATGCTTGGG-G--TTATCATGAGTTTA 978
||||| || || | || | | | | | | | | ||| | || ||| || || |
Sbjct 1061 TTGGTACACTTCTT--GGTTT-T--AT-T-A-C-T-C--GGGCGACTT-TCA-GA-TT-A 1104
Query 979 TCTCTTTCTCAGACCTTAGAGATTCATCAAAGGGTTTCGTTGTGAACGATGTGTTAAAGG 1038
|| || | | || || |||||||||||||||||||| |||||||| ||| |||| ||||
Sbjct 1105 TCCCTCTAGCTGATCTCAGAGATTCATCAAAGGGTTTTGTTGTGAATGATATGTTGAAGG 1164
Query 1039 TTCAAGT-CGAAATGGAGGCCATTTCTTCAACCAAGTACTCCCCCTAGTTAGATTTCTCA 1097
|| |||| | || | |||| |||||| |||||||||| | ||| |||||||||||||||
Sbjct 1165 TTGAAGTTC-AACTCGAGGGCATTTCCTCAACCAAGTGGTACCC-TAGTTAGATTTCTCA 1222
Query 1098 A 1098
|
Sbjct 1223 A 1223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54417390780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5