BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933294
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27535.1 | Symbols: | ribosomal protein L10A family protein... 357 3e-98
> AT2G27535.1 | Symbols: | ribosomal protein L10A family protein
| chr2:11765323-11766144 REVERSE LENGTH=548
Length=548
Score = 357 bits (193), Expect = 3e-98
Identities = 250/277 (90%), Gaps = 5/277 (2%)
Strand=Plus/Plus
Query 18 TCAAGATGAGTAAGCTTAATGGTGATGCTGTTAGAGAAGCCATTACAAATATCGTTCTCG 77
|||||||||||||||||||| ||||| || |||||||||||||| |||||||| || |
Sbjct 203 TCAAGATGAGTAAGCTTAATAGTGATACTCTTAGAGAAGCCATTGCAAATATCACTCGCC 262
Query 78 CATCTAAGGAGAGGAAACTCAAGATGAGACAACTTGAGAGTGAGGCTCTTAGAGAAGCCA 137
|||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 263 CATCGGAGGAGAGGAAACTCAAAATGAGACAACTTGAGAGTGAGTCTCTTAGAGAAGCCA 322
Query 138 TTACAACTATTGAGGGAAAATCTGAGGAGAAGAAACGTAACGTTGGGAAGACAGTGGAGC 197
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 323 TTGCAACTATTGAGGGAAAATCTGAGGAGAAGAAACGTAACGTTGGGAAGACAGTGAAGC 382
Query 198 TT-AAGAGTGAGGCTCTAAGAGAAGCCATTGCAACTATCAAGGACAAATCTAAAGAGAAG 256
|| || ||||||||||| |||||||||||||||| |||||| || |||||||||||||||
Sbjct 383 TTCAA-AGTGAGGCTCTTAGAGAAGCCATTGCAAGTATCAATGAAAAATCTAAAGAGAAG 441
Query 257 AAGCCATTATAATTTGTGTCT--ATTT-GTTGGAATG 290
|||||| ||||||||||| | ||| |||||||||
Sbjct 442 AAGCCAGAATAATTTGTGTGTCCATTACGTTGGAATG 478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13371221234
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5