BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933308

Length=587
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G19600.1 | Symbols: ATKEA4, KEA4 | K+ efflux antiporter 4 | ...   414    4e-115


> AT2G19600.1 | Symbols: ATKEA4, KEA4 | K+ efflux antiporter 4 
| chr2:8479198-8483830 FORWARD LENGTH=2204
Length=2204

 Score =  414 bits (224),  Expect = 4e-115
 Identities = 232/236 (98%), Gaps = 0/236 (0%)
 Strand=Plus/Plus

Query  273  AGCTAGATTTAAGGTTGATATCAGATTTGGTCGTCGTCATTGTTTCTGCTACTTGTGGTG  332
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  568  AGCTAGATTTAAGGCTGATATCAGATTTGGTCGTCGTCATTGTTTCTGCTACTTGTGGTG  627

Query  333  GAATTGCCTTTGCATGTGCTGGTCAACCGGTCATTACTGGGTATCTATTGGCTGGATCTA  392
            ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  628  GAATTGCCTTTGCTTGTGCGGGTCAACCGGTCATTACTGGGTATCTATTGGCTGGATCTA  687

Query  393  TCATTGGACCGGGCGGGTTAAGCTTTGTTAGTGAAATGGTGCAGGTTGAAACAGTAGCTC  452
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  688  TCATTGGACCGGGCGGGTTAAGCTTTGTTAGTGAAATGGTGCAGGTCGAAACAGTAGCTC  747

Query  453  AGTTTGGTGTTATCTTTCTCCTTTTTGCTTTAGGATTAGAATTTTCTGCAGCGAAG  508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  748  AGTTTGGTGTTATCTTTCTCCTTTTTGCTTTAGGATTAGAATTTTCTGCAGCGAAG  803


 Score =  185 bits (100),  Expect = 3e-46
 Identities = 114/121 (94%), Gaps = 0/121 (0%)
 Strand=Plus/Plus

Query  154  AGAGACTGTTGCTCGAGTTAAGCCTAAGAAAAATGAAACCAAGACCAAGGAGGAGAAATC  213
            |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  398  AGAGACTGTTGCACGAGTTAAGCCAAAGAAAAATGAAACCAAGACCAAGGAGGAGAAATC  457

Query  214  GTTCTTCAATTTGGATAATGAGAATGGCGTAGAAGATACTCCGAGACTGATAGATAGGAA  273
             ||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct  458  CTTCTTTAATTTGGATAACGAGAATGGCGTAGAGGATACTCCAAGACTGATAGATAGGAA  517

Query  274  G  274
            |
Sbjct  518  G  518


 Score =  169 bits (91),  Expect = 3e-41
 Identities = 104/110 (95%), Gaps = 2/110 (2%)
 Strand=Plus/Plus

Query  46   CCGACGATTGAGGTCCAATGCCACGAGTGCCAAACCTAAGGAAGATAGTTTCGCTGATAT  105
            ||| || |||| |||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct  238  CCGTCG-TTGA-GTCCAATGCCACGAGTGCGAAACCTAGGGAAGATAGTTTCGCTGATAT  295

Query  106  GATCGATCGGGCACTTGAGAAAGAGTTTCCTGATAATGACCAGAACGAAG  155
            ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  296  GATCGATCGAGCACTTGAGAAAGAGTTTCCTGATAATGACCAGAACGAAG  345



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28231590614


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5