BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933315

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G28570.1 | Symbols:  | unknown protein; Has 13 Blast hits to...   412    6e-115


> AT2G28570.1 | Symbols:  | unknown protein; Has 13 Blast hits 
to 13 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:12241770-12242729 FORWARD 
LENGTH=960
Length=960

 Score =  412 bits (223),  Expect = 6e-115
 Identities = 261/279 (94%), Gaps = 3/279 (1%)
 Strand=Plus/Plus

Query  1    TTGCAGAGAAACTTGACATTTATGGAGTCTCTGACGACCAAATCCACCACCGCGAGGAGC  60
            |||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||
Sbjct  274  TTGCAGAGAAACTTGACATTTATGGAGTCTGTGAAGACCAAATCCTCCACCGCGAGGAGC  333

Query  61   GTTGAGCTACCGCCTCGCCGTGGAAAGGTGAAGCGAGAGATCTTTGGTTTCTTAGCCAAT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  334  GTTGAGCTACCGCCTCGCCGTGGAAAGGTGAAGCGAGAGATCTTTGGTTTCTTAGCCAAT  393

Query  121  TCCATCGTTTCCGT-GA--TGAAAGCCGGTGGAGCGTTTGGGAGGAACTCCGGAGGTGGT  177
            ||||| |||||||  |   ||||||| |||||| ||||| ||||||||  ||||||||||
Sbjct  394  TCCATTGTTTCCGCCGCCGTGAAAGCTGGTGGATCGTTTAGGAGGAACGGCGGAGGTGGT  453

Query  178  GGTGGTGGCTCTTCTTCCTCCACCACCACTCCTCCAGGGAGTGGCTACACCTCCGAACAA  237
            |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || 
Sbjct  454  GGTGGTGGCTCTTCTTCCTCAACCACCACTCCTCCAGGGAGTGGATACACCTCCGACCAG  513

Query  238  AACAACGAATCCACTTAAACAACAAACAGACATAAAGAC  276
            |||||||||||||||||||||||||||||||||||||||
Sbjct  514  AACAACGAATCCACTTAAACAACAAACAGACATAAAGAC  552



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12667472748


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5