BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933318
Length=1567
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28600.1 | Symbols: | P-loop containing nucleoside triphosp... 2207 0.0
> AT2G28600.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:12251784-12254823
FORWARD LENGTH=1721
Length=1721
Score = 2207 bits (1195), Expect = 0.0
Identities = 1433/1547 (93%), Gaps = 19/1547 (1%)
Strand=Plus/Plus
Query 23 AAAAATGGCGAAAGGAGACGATAATGTGCAGAGGAAGAAGAATAAATTGACGAGGAAGAA 82
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 58 AAAAATGGCGAAAGGAGACGATAATGTGCAGAGGAAGAAGAATAAAGTGACGAGGAAGAA 117
Query 83 GATGAGTAGGAAGAACGATACCGCCACCGTCTCTGCTCGTATCTCCGCCATTATCGCCGC 142
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 118 GATGAGTAGGAAGAACGATACCGCCACCGTATCTGCTCGTATCGCCGCCATTATCGCCGC 177
Query 143 CAAGAAACGTCGCAAGTCTGGTAAACGCAGCATGTGTCAGGGAATGTGTTTTACTCTTCC 202
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 178 CAAGAAACGTCGCAAGTCTGGCAAACGCAGCATGTGTCAGGGAATGTGTTTTACTCTTCC 237
Query 203 TACACTTGAAGATCCATTCAATGAAAGGCAAGGTAAAGCTGATATTACTaaaaagaaaaa 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 238 TACACTTGAAGATCCATTCAATGAAAGGCAAGGTAAAGCTGATATTACTAAAAAGAAGAA 297
Query 263 gaaaaagaaaaaggtcaagagtagagaagagaagaaaCCATCTACTATGTCCATTGACGG 322
||||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||| ||
Sbjct 298 GAAAAAGAAAAAGGTGAAGAGTAGAGAAGACAAGAAACCATCTCCTATGTCTATTGAAGG 357
Query 323 TGTTGAGAAGAAGATGGATGGTCCACCAAAGTTTCTCATGTTGAACTTGAATGAGATTGA 382
|||| | |||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 358 TGTT--G-AGAAGATGGATGGTCCACCAAAGTTTCTGATGTTAAACTTGAATGAGATTGA 414
Query 383 GAGCTCGTTTCGTAAAGATAGTACATATAGTGAACAGCATGATAAGTCTTTGTTCACTAG 442
|||||| ||||||||||||| |||||| |||||||| ||||||||||||||||| |||||
Sbjct 415 GAGCTCATTTCGTAAAGATATTACATACAGTGAACAACATGATAAGTCTTTGTTTACTAG 474
Query 443 CACTTGGGGGATTGAGTTCTGGAAATGTTTTTCATCTGGGAAAGATATTTTGGAGACAAG 502
| |||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct 475 TAGTTGGGGGATTGAGTTCTGGAAATGTTACTCATCTGGGAATGATATTTTGGACACGAG 534
Query 503 TGGAATGTCTTCTACTGTGGAACAGATTGCTTGGATTGTTTCAAGTGCAGCTGATGCTAT 562
|||||||||||| ||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 535 TGGAATGTCTTCCACTGTGGAACAGATTGCTTGGATTGTTTCTACTGCTGCTGATGCTAT 594
Query 563 TGCTAGACGGGAGAAAGACgaggaggaagaggaggaggaggaggaggaggTT-GGAAACA 621
||||||||||||||||||| || | | ||||||||||||||| | ||| |||||||
Sbjct 595 TGCTAGACGGGAGAAAGAC---GA-G--GTGGAGGAGGAGGAGGA-GTTGTTGGGAAACA 647
Query 622 GTCCTTTTCTTTTGTACCTTGTGCCATCTCAGTCCAAAGCTTCTCAGGTCCGATCCGTTT 681
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 648 GTCCTTTTCTTTTGTACCTTGTGCCATCTCAGTCTAAAGCTTCTCAGGTTCGATCGGTTT 707
Query 682 GCAAGGCACTGAAAGGTATTGGAATTCACACAGTGAGCTTACACCAAGGCGCGCCACTAG 741
|||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||
Sbjct 708 GCAAGGCACTGAAAGGTATTGGAATTCATACTGTGAGCTTACACCAAGGAGCACCACTAG 767
Query 742 ATCATCAGATTTCAGGATTGAAAAGCGTTGAGCCTGAATTTATAGTTGCTACACCTGATA 801
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 768 ATCATCAGATTTCCGGATTAAAAAGCGTTGAGCCTGAATTTATAGTTGCTACACCTGAGA 827
Query 802 GACTTTTGGAGATTGTTACCTTGAAGGGCGTTGATATAT-CAAGCGTTTCATTGCTGGTA 860
|||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct 828 GACTTTTGGAGATTGTTACCTTGAAGGGTGTTGATATATCCAA-CGTTTCATTGCTGGTC 886
Query 861 ATTGATGAACTAGGTTCACTTTGCACTGGTGGTTATCTAGATGCTGTTAAATCCATTAAG 920
|| ||||||||||||||||| |||| ||||||||||||| |||||||||||||||| |||
Sbjct 887 ATCGATGAACTAGGTTCACTGTGCAGTGGTGGTTATCTAAATGCTGTTAAATCCATCAAG 946
Query 921 CAGGCCATTTCCAGCAAACACCAATCGATAGTTTTCAACGACAGTTTTAGTGATTCCACT 980
|||||||||||||||||||||||| | |||||||| ||| |||||||||||| ||||| |
Sbjct 947 CAGGCCATTTCCAGCAAACACCAAACTATAGTTTTTAACAACAGTTTTAGTGCTTCCATT 1006
Query 981 ATTCCAGCCGTCCAGAGTCTT-TTGGGGGGATCAGTTAACAGAGTTACCGTCAGTGATTC 1039
||||| ||||| |||||| || |||||||||||||||||||||||||| |||| ||| ||
Sbjct 1007 ATTCCGGCCGTACAGAGT-TTCTTGGGGGGATCAGTTAACAGAGTTACTGTCAATGAGTC 1065
Query 1040 TGTTGCCAGCCAAGGCTCTTGTATTACCCAGACTGTTAGTGTCTGCGCCTCGGAGGaaaa 1099
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1066 TGTTGCCAGCCAAGGCTCTTGTATTACCCAGACTGTTAGTGTATGCGCCTCGGAGGAAAA 1125
Query 1100 aaaGCTGCAGAAGTTTGCAGAGCATCTGGGTTCATCTTCGTCGAAGATAATATACATTGT 1159
||| ||||||||||| ||| ||||||||| |||||||||||||||| |||||||||||||
Sbjct 1126 AAAACTGCAGAAGTTCGCAAAGCATCTGGATTCATCTTCGTCGAAGTTAATATACATTGT 1185
Query 1160 TACGAAGGAAGAAAGTTTCAAAAAGATAAAGGCTCTGCTTAAGCTCAAGGGTCTATCTGT 1219
||||||||| ||||||||||||||||||| |||| | ||||||||||||||| | |||||
Sbjct 1186 TACGAAGGAGGAAAGTTTCAAAAAGATAATGGCTATCCTTAAGCTCAAGGGTATCTCTGT 1245
Query 1220 CTCAATCAATAGTGACTCTAAAA-TCTCAGAGGTCAAAAAGAGCCGGAAACCTGTGGCAC 1278
|||| || |||||| || |||| |||||||||||||||||||||||||||||||||| |
Sbjct 1246 ATCAACCAGTAGTGATTC-AAAACTCTCAGAGGTCAAAAAGAGCCGGAAACCTGTGGCGC 1304
Query 1279 ACTTGATTGACATAGAACAGTTGGATACTACAGTTATGAGGGACTTC-GAAACCGTTCTA 1337
|||||||||| | |||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1305 ACTTGATTGATTTTGAACAGTTGGATACTACAGTTATGAGGGAC-TCTGAAACCGTTCTA 1363
Query 1338 CTTCCAGACTTTTTCCCATCAATCGAAATTTATACTCAGATTCTAACGAGTATGGCTAGA 1397
|||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 1364 CTTCCAGACTTTTTCCCATCAATCGAAATTTACACTCAGATTCTGACAAGTATGGCTAGA 1423
Query 1398 GAGAGTGTTCACGGCGTACTTCACAGCTTTATAACAGAAAAGGAGGCTGCTTCTTATCGA 1457
||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||| |
Sbjct 1424 GAGAGTGCTCACGGCGTACTTCACAGCTATATAACAGAAAAGGATGCTGCTTCTTATCAA 1483
Query 1458 GCTGGACCATTAGTGACTATCCTGGAGAATTGTGGTCAGAACGTGCCTGACCCTTGGAGG 1517
||||||||||| |||| | ||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1484 GCTGGACCATTGGTGAATGTCCTGGAGAATTGTGGTCAGAACGTACCTGACCGTTGGAGG 1543
Query 1518 AATATGTATGTCGCTATGTCTGATTAATCAAATGTTGTCTCCAATTC 1564
|||||| |||| ||||||||||||| || ||||||||||||||||||
Sbjct 1544 AATATGGATGTTGCTATGTCTGATTGATGAAATGTTGTCTCCAATTC 1590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77359039845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5