BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933322
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01600.1 | Symbols: anac044, NAC044 | NAC domain containing ... 361 3e-99
> AT3G01600.1 | Symbols: anac044, NAC044 | NAC domain containing
protein 44 | chr3:229171-231105 FORWARD LENGTH=1307
Length=1307
Score = 361 bits (195), Expect = 3e-99
Identities = 234/252 (93%), Gaps = 6/252 (2%)
Strand=Plus/Plus
Query 80 TTTG-GG-ACTTGACAGCATTCCTGAAGCTGCTTTAGGGAAGATGTGGTCCAAAAAAGCT 137
|||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 TTTGAGGAACTGGACAGCATTCCTGAAGCTGCTTTAGGGAAGATGTGGTCCAAAAAAGCT 1058
Query 138 CGAATGGATGAGGAATTTGTTGTAAACCTTAGTGAAGATAACTTAACATGCGACGAAAGC 197
||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||
Sbjct 1059 CGAATGGATGAGGAATTTGTTGTGAACCTAAGTGAAGATAACTTAATATGCGACGAAAGC 1118
Query 198 ATTGAAGCTTCGTCGCTTTGGGAAAATCAGGTTATCCCCAATCCTACTAGCCTGGGAACT 257
|| ||||||||||| |||||||||||||||||| |||||||||||| |||| ||||||
Sbjct 1119 ATGGAAGCTTCGTCTCTTTGGGAAAATCAGGTTCTCCCCAATCCTA---GCCTTGGAACT 1175
Query 258 GTTGGGGAATTCGATGGTTTTTCGAT-TCAGATCTGGAGAATGCAGATTTAGGAACTCCC 316
|||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 1176 GTTGGGGACTTCGATGGTTTTTCGATATCAGATCTGGAGAATGCAGATTTGGGGACTCCC 1235
Query 317 CCTGATTTGCTC 328
|||||||| |||
Sbjct 1236 CCTGATTTCCTC 1247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15281395696
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5