BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933324
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28630.1 | Symbols: KCS12 | 3-ketoacyl-CoA synthase 12 | chr... 2420 0.0
AT1G07720.1 | Symbols: KCS3 | 3-ketoacyl-CoA synthase 3 | chr1:... 1020 0.0
> AT2G28630.1 | Symbols: KCS12 | 3-ketoacyl-CoA synthase 12 | chr2:12275319-12277245
REVERSE LENGTH=1927
Length=1927
Score = 2420 bits (1310), Expect = 0.0
Identities = 1420/1474 (96%), Gaps = 3/1474 (0%)
Strand=Plus/Plus
Query 4 AAGAAGaaaaaaaGGAATAGTTATGGAtcttctctttctctttttctctcttctcctctc 63
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 76 AAGAAGAAAAAAA-AAATAACTATGGATCTTCTCTTTCTCTTTTTCTCTCTTCTCCTCTC 134
Query 64 ttacctctttttcAAGATCTGGAAACTCATAGACTCAAAGAAAGATAAAGATTGCTACAT 123
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 135 TTACCTCTTTTTCAAGATCTGGAAACTCATAGACTCAAAGCAAGACAAAGATTGCTACAT 194
Query 124 TTTAGACTACCAATGTCATAAACCTTCTGATGATCGAATGGTGAGCACTCAATTCAGCGG 183
|||||||||||||||||||||||| | || |||||||||||||||||||||||||| ||
Sbjct 195 TTTAGACTACCAATGTCATAAACCAACCGACGATCGAATGGTGAGCACTCAATTCAGTGG 254
Query 184 AGAGATCATTTACCGAAACCAAAACCTTGGCTTAACCGAATACAAGTTCCTTCTCAAAGC 243
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 255 AGAGATCATTTATCGAAACCAAAACCTTGGTTTAACCGAATACAAGTTCCTTCTCAAAGC 314
Query 244 AATAGTAAGCTCAGGGATTGGAGAACAAACCTACGCTCCAAGACTTGTCTTTGAAGGTCG 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 CATAGTAAGCTCAGGGATTGGAGAACAAACCTACGCTCCAAGACTTGTCTTTGAAGGTCG 374
Query 304 AGAAGAGCGTGCTTCGTTACAAGACGGGATCTCGGAGATGGAAGAGTTCTACGTAGACAG 363
|||||||||| ||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 375 AGAAGAGCGTCCTTCGTTACAAGATGGGATCTCCGAGATGGAAGAGTTCTACGTGGACAG 434
Query 364 CATCGGAAAACTCCTGGAGAGAAATCAAATTTCTCCTCAAGACATAGACATCCTCGTAGT 423
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 435 CATCGGAAAACTCCTGGAGAGAAATCAAATATCTCCTAAAGACATAGACATCCTCGTAGT 494
Query 424 CAACGTCTCCATGCTCTCTTCAACACCTTCTTTAGCTTCAAGAATCATAAACCATTACAA 483
|||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 495 CAACGTCTCCATGCTCTCTTCAACGCCATCTTTAGCTTCAAGAATCATTAACCATTACAA 554
Query 484 GATGAGAGACGACGTCAAAGTCTTCAACTTAACCGGGATGGGATGCAGCGCAAGTCTAAT 543
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 555 GATGAGAGACGACGTCAAAGTCTTCAACTTGACCGGGATGGGATGCAGCGCAAGTCTAAT 614
Query 544 CTCCGTAGACATTGTCAAGAACATCTTTAAGAGCTACGCAAACAAGTTAGCTCTTGTTGC 603
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 615 CTCCGTAGACATTGTCAAGAACATTTTTAAGAGCTACGCAAACAAGTTAGCTCTTGTTGC 674
Query 604 TACCTCCGAGTCTTTGAGCCCTAATTGGTATAGCGGAAACAACCGGTCGATGATCTTAGC 663
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 675 CACCTCCGAGTCTTTGAGCCCTAATTGGTATAGCGGAAACAACCGTTCAATGATCTTAGC 734
Query 664 CAACTGTTTGTTCCGGTCCGGTGGATGTGCTATTCTCTTGACTAACAAACGTAGCTTGAA 723
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CAACTGTTTGTTCCGGTCCGGTGGATGTGCTATTCTCTTGACTAACAAACGTAGCTTGA- 793
Query 724 GAA-GAATGCAATGTTTAAGCTCAAGTGTATGGTACGGACTCACCATGGAGCTAGAGAGG 782
||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 794 GAAAGAAAGCAATGTTTAAACTCAAGTGTATGGTACGGACTCACCATGGAGCTAGAGAGG 853
Query 783 AGTCTTATAATTGTTGTATCCAAGCCGAAGACGAACAAGGCCGTGTCGGGTTTTACTTAG 842
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 854 AGTCTTATAATTGTTGCATCCAAGCCGAAGATGAACAAGGCCGTGTCGGGTTTTACTTGG 913
Query 843 GGAAGAATCTACCAAAAGCTGCCACTCGTGCTTTTGTAGACAACCTCAAGGTTATAACAC 902
||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 914 GGAAGAATCTACCAAAAGCCGCTACTCGTGCTTTTGTAGAAAACCTCAAGGTTATAACAC 973
Query 903 CCAAGATTCTTCCTATAACCGAGCTTTTAAGGTTCATGTTAAAGCTTCTCATCAAGAAAA 962
||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 974 CCAAGATTCTTCCCGTAACCGAGCTTATAAGGTTCATGTTAAAGCTTCTTATCAAGAAAA 1033
Query 963 TCAAGATTCGTCAAAACCCTAGCAAGGGTTCCACGAATCTCCCACCGGGGACTCCTTTAA 1022
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1034 TCAAGATTCGTCAAAACCCTAGCAAGGGCTCCACGAATCTCCCACCGGGGACTCCATTAA 1093
Query 1023 AGGCAGGAATCAACTTCAAGACCGGGATCGAACATTTTTGCATTCATACCGGAGGAAAAG 1082
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1094 AGGCAGGAATCAACTTCAAGACCGGGATCGAACATTTTTGCATACATACCGGAGGAAAAG 1153
Query 1083 CTGTGATTGATGGGATTGGACATAGCTTGGATTTAAACGAGTATGATATTGAACCGGCGA 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1154 CTGTGATTGATGGGATTGGACATAGCTTGGATTTAAACGAGTATGATATTGAACCTGCGA 1213
Query 1143 GGATGACTCTTCACCGGTTTGGGAATACTTCAGCGAGTAGTTTGTGGTATGTGTTGGCTT 1202
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1214 GGATGACTCTTCACCGGTTTGGCAATACTTCGGCGAGTAGTTTGTGGTATGTGTTGGCTT 1273
Query 1203 ACATGGAGGCCAAGAAGAGATTGAAGAGAGGAGATAGAGTGTTTATGATAAGCTTTGGAG 1262
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1274 ACATGGAGGCCAAGAAGAGATTGAAGAGAGGAGATAGAGTTTTTATGATAAGCTTTGGAG 1333
Query 1263 CTGGTTTTAAGTGTAATAGCTGCGTTTGGGAAGTTGTGAGAGATCTTACTGTTGGTGAAT 1322
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1334 CTGGTTTTAAGTGTAATAGCTGCGTTTGGGAAGTTGTGAGAGATCTTACTGGTGGTGAAT 1393
Query 1323 CAAAAGGAAATGTGTGGAATCATTGCATTGATGATTATCCACCAAAATCGATTTTGAATC 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1394 CAAAAGGAAATGTGTGGAATCATTGCATTGATGATTATCCACCAAAATCGATTCTGAATC 1453
Query 1383 CTTATTTGGAGAAGTTTGGTTGGATTCAAGATGAAGATCCTGACACTTTCAAGGTCCCTG 1442
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 CTTATTTGGAGAAGTTTGGCTGGATTCAAGATGAAGATCCTGACACTTTCAAGGTCCCTG 1513
Query 1443 ACGCTTTCATGTAAAACGTTTTGGCACAAAAACG 1476
||||||||||||||||||||| |||||||||||
Sbjct 1514 ACGCTTTCATGTAAAACGTTTACGCACAAAAACG 1547
> AT1G07720.1 | Symbols: KCS3 | 3-ketoacyl-CoA synthase 3 | chr1:2390655-2392453
REVERSE LENGTH=1799
Length=1799
Score = 1020 bits (552), Expect = 0.0
Identities = 1168/1455 (80%), Gaps = 84/1455 (6%)
Strand=Plus/Plus
Query 26 ATGGAtcttctct-ttct-ctttttctctcttctcctctcttacctctttttcAAGATCT 83
||||||||||| | || | | | ||||||||||| ||||||| ||| | ||||||||||
Sbjct 48 ATGGATCTTCT-TGTTATGC-TCCTCTCTCTTCTCGTCTCTTATCTCATCTTCAAGATCT 105
Query 84 GGAAACTCATAGACTCAAAGAAAGA-TAAAGATTGCTACATTTTAGACTACCAATGTCAT 142
|||||| ||||||||| |||| ||| ||| | |||||||| || ||||||||||||||
Sbjct 106 GGAAACGCATAGACTCCAAGAGAGACCAAA-ACTGCTACATCTTGGACTACCAATGTCAC 164
Query 143 AAACCTTCTGATGATCGAATGGTGAGCACTCAATTCAGCGGAGAGATCAT--TTACCGAA 200
|||||||| || ||||| ||||||| ||||||||||||||| || ||||| || ||||
Sbjct 165 AAACCTTCCGACGATCGTATGGTGAACACTCAATTCAGCGGTGATATCATCCTT--CGAA 222
Query 201 ACCAAA-ACCTT-GGCTTAACCGAATACAAGTTCCTTCTCAAAGCAATAGTAAGCTCAGG 258
| |||| ||||| |||| || ||| ||||||||||| |||||||| || || || || ||
Sbjct 223 A-CAAACACCTTCGGCTCAA-CGAGTACAAGTTCCTCCTCAAAGCCATCGTTAGTTCCGG 280
Query 259 GATTGGAGAACAAACCTACGCTCCAAGACT-TGTCTTTGAAGGTCGAGAAGAGCGTGCTT 317
|| ||||| ||||| ||||| ||||| || | ||||||| || || ||| ||||| ||
Sbjct 281 TATCGGAGAGCAAACTTACGCACCAAGGCTCT-TCTTTGAGGGCCGTGAACAGCGTCCTA 339
Query 318 CGTTACAAGACGGGATCTCGGAGATGGAAGAGTTCTACGTAGACAGCATCGGA-AAACTC 376
|| |||| || ||| ||||||||||||||||||| ||| |||||| |||| || ||| ||
Sbjct 340 CGCTACAGGATGGGCTCTCGGAGATGGAAGAGTTTTACATAGACACCATC-GAGAAAGTC 398
Query 377 CTGGAGAGAAATC-AAATTTCTCC-TCAAGACATAGACATCCTCGTAGTCAACGTCTCCA 434
|| ||||||| | ||||||| || || || || ||||||||||||||||||||||| |
Sbjct 399 CTTAAGAGAAA-CAAAATTTCACCTTC-GGAGATTGACATCCTCGTAGTCAACGTCTCAA 456
Query 435 TGCTCTCTTCAACACCTTCTTTAGCTTCAAGAATCATAAACCATTACAAGATGAGAGACG 494
||||| |||||| ||||| || || |||||||||| ||||||||||| |||||||| |
Sbjct 457 TGCTCAATTCAACGCCTTCACTATCTGCAAGAATCATTAACCATTACAAAATGAGAGAAG 516
Query 495 ACGTCAAAGTCTTCAACTTAACCGG-GATGGGATGCAGCGCAAGTCTAATCTCCGTAGAC 553
|| | |||||||||||||| | ||| ||||||||| ||||| ||| | |||||| ||||
Sbjct 517 ACATAAAAGTCTTCAACTTGA-CGGCGATGGGATGTAGCGCGAGTGTTATCTCCATAGAT 575
Query 554 ATTGTCAAGAACATCTTTAAGAGC-TACGCA-AACAAG-TTAGCTCTTGTTGCT-ACCTC 609
|||||||| |||||||| || | | ||| | |||||| || |||||||| | | |||||
Sbjct 576 ATTGTCAAAAACATCTTCAA-AACATAC-AAGAACAAGCTT-GCTCTTGTCG-TGACCTC 631
Query 610 CGAGTC-TTTGAGCCCTAATTGGTATAGCGGAAACAACCGGTCGATGA-TCTTAGCCAAC 667
||||| || || ||||| ||||| ||||||||||||||||| |||| |||| ||||||
Sbjct 632 AGAGTCACTT-AGTCCTAACTGGTACAGCGGAAACAACCGGTCCATGATTCTT-GCCAAC 689
Query 668 TGTTTGTTCCGGTCCGGTGGATGTGCTATTCTCTTGACTAACAAACGTAGCT-TGAAG-A 725
||||||||||| || ||||| || ||| |||||||||| ||||| ||||| | || || |
Sbjct 690 TGTTTGTTCCGCTCTGGTGGCTGCGCTGTTCTCTTGACGAACAAGCGTAG-TCTG-AGCA 747
Query 726 AGA-ATGCAATGTTTAAGCTCAA-GTGTATGGTACGGACTCACCATGGAGCTAGAGAGGA 783
|| | || ||||| ||||| || |||| ||||| |||| ||||||||||| ||||| ||
Sbjct 748 GGAGA-GCCATGTTCAAGCT-AAGGTGTTTGGTAAGGACGCACCATGGAGCCAGAGACGA 805
Query 784 GTC-TTATAATTG-TTGTATCCAAGCCGAAGACGAACAAGGCCGTGTCGGGT-TTTACTT 840
|| || || | ||| ||||| |||||||| | ||| | | || ||| | ||||
Sbjct 806 TTCATT-CAA-CGCCTGTGTCCAAAAAGAAGACGAGCTAGGACATATC-GGTGTCCACTT 862
Query 841 AGGGAAGAATCTACCAAAAGCTGCCACTCGTGCTTTTGTAGACAACCTCAAGGTTATAAC 900
|| |||| ||| |||||||| || ||||||||||| ||||||||||||| || || ||
Sbjct 863 AGACAAGACTCTTCCAAAAGCAGCGACTCGTGCTTTCATAGACAACCTCAAAGTCATCAC 922
Query 901 ACCCAAGATTCTTCCTATAACCGAGCTTTTAAGGTTCATGTTAAAG-CTTC-TCATCAAG 958
|||||||||||||| |||| |||||||||||||| ||||| | |||| || |||||
Sbjct 923 TCCCAAGATTCTTCCGGTAACAGAGCTTTTAAGGTTTATGTT-GTGTCTTCTTC-TCAAG 980
Query 959 AAAATCAAGATTCGTCA-AAACCCTAGCAAGGGTTCCACGAA--T--CTC---C--CACC 1008
||| ||||| | | ||||||||| || || ||||| | ||| | | ||
Sbjct 981 ------AAGCTTCGT-AGCAGCCCTAGCAAAGGCTCGACGAACGTGACTCAGGCAGCTCC 1033
Query 1009 --GGGGACTCCTTTAAAGGCAGGAATCAACTTCAAGACCGGGATCGAACATTTTTGCATT 1066
|| | ||||| ||||| || |||||||||||||| || || ||||| ||||||
Sbjct 1034 AAAGGCA-GGGGTTAAA-GCAGGGATTAACTTCAAGACCGGTATTGACCATTTCTGCATT 1091
Query 1067 CATACCGGAGGAAAAGCTGTGATTGATGGGATTGGACATAGCTTGGATTTAAACGAGTAT 1126
|| || ||||| ||||| || || || | ||| || | ||| | || |||||||||||
Sbjct 1092 CACACTGGAGGTAAAGCGGTTATCGACGCGATCGGTTACAGCCTCGACTTAAACGAGTAC 1151
Query 1127 GATATTGAACCGGCGAGGATGACTCTT-CACCGGTTTGGGAATACTTCAGCGAGTAGTTT 1185
||| ||||||||||||||||||| || ||||||||||| || || ||||||||||| ||
Sbjct 1152 GATCTTGAACCGGCGAGGATGAC-GTTACACCGGTTTGGAAACACGTCAGCGAGTAGCTT 1210
Query 1186 GTGGTATGTGTTGGCTTACATGGAGGCCAAGAAGAGATTGAAGAGAGGAGATAGAGTGTT 1245
||||||||| |||| || |||||||| |||||||| ||||||||||||||||||||||
Sbjct 1211 GTGGTATGTTTTGGGGTATATGGAGGCAAAGAAGAGGCTGAAGAGAGGAGATAGAGTGTT 1270
Query 1246 TATGATAAGCTTTGGAGCTGGTTTTAAGTGTAATAGCTGCGTTTGGGAAGTTGTGAGAGA 1305
||||| |||||||| || ||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1271 CATGATCAGCTTTGGGGCAGGTTTCAAGTGCAATAGTTGCGTTTGGGAAGTTGTGAGAGA 1330
Query 1306 TCTTA-CTGTTGGTGAATCAAAAGGAAATGTGTGGAATCATTGCATTGATGATTATCCAC 1364
||||| | ||||| ||| | ||| ||||||||||||||||||||| || | || ||||
Sbjct 1331 TCTTAAC-GTTGGAGAAGCTGTAGGGAATGTGTGGAATCATTGCATTAATCAATACCCAC 1389
Query 1365 CAAAATCGATTTTGAATCC-TTATTTGGAGAAGTTTGGTTGGATTCA--A-GATGAAGAT 1420
||||||||||||||||||| || ||| ||||||| |||||||||||| | || ||||||
Sbjct 1390 CAAAATCGATTTTGAATCCGTT-TTTCGAGAAGTATGGTTGGATTCATGAAGAAGAAGAT 1448
Query 1421 CCTGACACTTTCAAG 1435
||||| |||||||||
Sbjct 1449 CCTGATACTTTCAAG 1463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790790250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5