BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933328

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G33660.1 | Symbols:  | peroxidase family protein | chr1:1219...   204    5e-52
  AT1G07890.3 | Symbols: APX1, MEE6, CS1, ATAPX1, ATAPX01 | ascor...   174    4e-43


> AT1G33660.1 | Symbols:  | peroxidase family protein | chr1:12197701-12198322 
REVERSE LENGTH=312
Length=312

 Score =  204 bits (110),  Expect = 5e-52
 Identities = 133/144 (92%), Gaps = 2/144 (1%)
 Strand=Plus/Plus

Query  164  CACCTCGAGAGGGTCGTCTTCCTGATGCTACAAAGGGTTTTGATCACTTGAGTGATGTAT  223
            ||||||  ||||||||||| |||||||||||||| ||||||||||  ||||| |||||||
Sbjct  170  CACCTCCTGAGGGTCGTCTCCCTGATGCTACAAAAGGTTTTGATCTGTTGAGAGATGTAT  229

Query  224  TTGCTAAGCAGATGGGCTTGTCTGACAAGGACATTGTCGCTTTATCTGG-TGCCCACACT  282
            ||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct  230  TTGCTAAGCGGATGGGCTTGTCTGACAAGGACATTGTCGCTTTATCTGGAT-CCCACACT  288

Query  283  CCTATTTCTCCATTTCAGAGCTAA  306
            ||||||||||||| ||||||||||
Sbjct  289  CCTATTTCTCCATCTCAGAGCTAA  312


> AT1G07890.3 | Symbols: APX1, MEE6, CS1, ATAPX1, ATAPX01 | ascorbate 
peroxidase 1 | chr1:2437725-2439665 FORWARD LENGTH=1022
Length=1022

 Score =  174 bits (94),  Expect = 4e-43
 Identities = 112/121 (93%), Gaps = 0/121 (0%)
 Strand=Plus/Plus

Query  163  CCACCTCGAGAGGGTCGTCTTCCTGATGCTACAAAGGGTTTTGATCACTTGAGTGATGTA  222
            ||||||| |||||||||||||||||||||||| ||||||| ||| || ||||| ||||| 
Sbjct  412  CCACCTCCAGAGGGTCGTCTTCCTGATGCTACCAAGGGTTGTGACCATTTGAGAGATGTC  471

Query  223  TTTGCTAAGCAGATGGGCTTGTCTGACAAGGACATTGTCGCTTTATCTGGTGCCCACACT  282
            |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct  472  TTTGCTAAGCAGATGGGCTTATCTGACAAAGACATTGTCGCTTTATCTGGTGCCCACACT  531

Query  283  C  283
            |
Sbjct  532  C  532



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15180860198


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5