BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933335
Length=737
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28690.1 | Symbols: | Protein of unknown function (DUF1635)... 1129 0.0
> AT2G28690.1 | Symbols: | Protein of unknown function (DUF1635)
| chr2:12306890-12308628 REVERSE LENGTH=1097
Length=1097
Score = 1129 bits (611), Expect = 0.0
Identities = 697/739 (94%), Gaps = 3/739 (0%)
Strand=Plus/Plus
Query 1 GAAAAGAAGAGACAAAACAAATGGAAGAGTTGGGTTCTATTTGGTTTTACCAAGAGAGTA 60
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 GAAGAGAAGAGACCAAACAAATGGAAGAGTTGGGTTCTATTTGGTTTTACCAAGAGAGTA 191
Query 61 TGGATGAATTAAGACAAAAGCTTCAATATAGTTCCTTTGAACTCGAAGCAGTGAAAGCAA 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 192 TGGATGAATTAAGACAAAAGCTTCAATATAGTTCCTTTGAACTCGAAGCCGTGAAAGCAA 251
Query 121 AAGCTAATGAAGAAACAAAACTTCATCAAGAAGAAGTGAAGAATCTTCTTCATCTTCTCA 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 252 AAGCTAATGAAGAAACAAAACTTCACCAAGAAGAAGTGAAGAATCTTCTTCATCTTCTCA 311
Query 181 AACTTGCTCGTCAAGAAAGAGACGAAGCTAAAGATCAACTACAAAAACTTCTCACAATCA 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 312 AACTTGCTCGTCAAGAAAGAGACGAAGCTAAAGATCAATTACAAAAACTTCTCACAATCA 371
Query 241 AAACAAATTCAGGCATAACCGAGTCAAACTCACACGGTTCTTCACCGGTTGACTCATTCT 300
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 372 AAACAAATTCAAGCATAACCGAGTCAAACTCTCACGGTTCTTCACCGGTTGACTCGTTCT 431
Query 301 TTGAACCGGTCTCATCCTCTGAATTCTCCAATTTCAACATAATACCAGAACCGGTTAACC 360
| ||||||||||||||||| |||||||||||||||||||| |||| |||||| ||||||
Sbjct 432 TCGAACCGGTCTCATCCTCGGAATTCTCCAATTTCAACATGGTACCTGAACCGATTAACC 491
Query 361 AAATCAAGTTCAAGAACCGACAACAACCCGTTAACCGGATCTTGAAAAAGATTGATCCTG 420
|| |||| ||||||||||||||||||| ||||||||||| |||||| |||||||||||||
Sbjct 492 AAGTCAAATTCAAGAACCGACAACAACTCGTTAACCGGAACTTGAAGAAGATTGATCCTG 551
Query 421 TGGATGCTCTAATGGATGAGATTATAAAAGGCAAATCTTTACCGGAGAAAGGGAAGCTTC 480
|||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||
Sbjct 552 TGGATGCTCTAATGGATGAGATCATAAAAGGTAAAGCTTTACCGGAGAAAGGGAAGCTTC 611
Query 481 TTCAAACAGTGATGAAATCTGGACCGTTGCTTCAAACACTTCTTGTTGCTGGTCCTCTTC 540
||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 612 TTCAAACTGTGATGGAATCTGGACCGTTGCTTCAAACACTTCTTGTTGCTGGTCCACTTC 671
Query 541 CACGGTGGCGTAATCCTCCGCCGCTTCAACAGAGCTTAAGAGTTCCTCCGATCTCAAACT 600
||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 672 CACGGTGGCGTAATCCTCCCCCGCTTCAACAGAGCTTTAGAGTCCCTCCGATCTCTAACT 731
Query 601 CTTACGGTTGTTTGCCGACAACGACGACG--T-CGATACTGAATTTTAGAGGTTGCTCTG 657
||||||||||||| ||| | ||||| ||| | | || ||||||||||||||||||||||
Sbjct 732 CTTACGGTTGTTTACCGGCGACGACAACGACTTCAATGCTGAATTTTAGAGGTTGCTCTG 791
Query 658 TTCCTGGAATTGCCACCGGAATTGAAGTTGCTACTAAACGACAACGATTTCATTAGTGCT 717
||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 792 TTCCTAGAATTGCTACCGGAATTGAAGTTGCAACTAAACGACAACGATTTCATTAGTGTT 851
Query 718 TTTGTTGTTACAATTATTT 736
|||||||||||||||||||
Sbjct 852 TTTGTTGTTACAATTATTT 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35766712664
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5