BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933337

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G28710.1 | Symbols:  | C2H2-type zinc finger family protein ...   795    0.0  


> AT2G28710.1 | Symbols:  | C2H2-type zinc finger family protein 
| chr2:12322386-12323584 FORWARD LENGTH=677
Length=677

 Score =  795 bits (430),  Expect = 0.0
 Identities = 469/488 (96%), Gaps = 1/488 (0%)
 Strand=Plus/Plus

Query  12   ATCAGTCAAATGGAAAGGGGAAGATCAGAGATGGAGATGATAAACAACATGGCAAATTGC  71
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  58   ATCAGTCAAATGGAAAGGGGAAGATCAGATATGGAGATGATAAACAACATGGCAAATTGC  117

Query  72   TTGATTCTTCTATCAAAGGCTCATCAAAACGACACCAAAAGCCGTGTTTTCGCGTGCAAG  131
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  118  TTGATTCTTCTATCAAAGGCCCATCAAAACGACACCAAAAGCCGTGTTTTCGCGTGCAAG  177

Query  132  ACATGCAACAAGGAGTTCCCGTCGTTTCAAGCCTTGGGAGGTCACCGAGCCAGCCACCGG  191
            ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  178  ACATGCAACAAAGAGTTCCCGTCGTTCCAAGCCTTGGGAGGTCACCGAGCCAGCCACCGG  237

Query  192  CGATCGGCAGCCCTTGAAGGCCACGCGCCTCCTTCTCCTAAGAGAGTCAAACCGGTGAAA  251
            ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  238  CGATCCGCAGCGCTTGAAGGCCACGCACCTCCTTCTCCTAAGAGAGTCAAACCGGTGAAA  297

Query  252  CACGAGTGTCCCATATGCGGTGCTGAGTTCGCGGTAGGGCAAGCCTTGGGTGGTCACATG  311
            ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct  298  CACGAGTGTCCCATATGTGGTGCTGAGTTCGCGGTAGGGCAGGCCTTAGGTGGTCACATG  357

Query  312  AGGAAGCATAGAGGTGGATCAGGAGGAGCAGTTGGCCGGAGTTTGGCACCGGCTACAGCG  371
            |||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||
Sbjct  358  AGGAAGCATAGAGGTGGATCAGGAGGAGGAGGTGGCCGGAGTTTGGCGCCGGCTACAGCG  417

Query  372  CCGGTGACGATGAAGAAATCTGGCGGTGGTAATGGAAAGAGGGTTTTGTGTTTGGACTTG  431
            |||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct  418  CCGGTGACGATGAAGAAATCAGGCGGTGGTAATGGAAAAAGAGTTTTGTGTTTGGACTTG  477

Query  432  AACTTGACGCCTTTAGAGAATGAAGATTTGAAGTTGGAGCTTGGGAGGTTGAttttctga  491
            |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  478  AACTTGACGCCTTTAGAGAACGAAGATTTGAAGTTGGAGCTTGGGAGGTTTATTTTCTGA  537

Query  492  tttt-gtt  498
            |||| |||
Sbjct  538  TTTTTGTT  545



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24413795442


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5