BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933338
Length=506
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28720.1 | Symbols: | Histone superfamily protein | chr2:12... 765 0.0
AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein | ch... 355 2e-97
> AT2G28720.1 | Symbols: | Histone superfamily protein | chr2:12326978-12327678
FORWARD LENGTH=701
Length=701
Score = 765 bits (414), Expect = 0.0
Identities = 468/492 (95%), Gaps = 12/492 (2%)
Strand=Plus/Plus
Query 1 TTTCCCGAGAAAAACT-CAAAAATGGCACCAAAAGCTGGAAAGAAACCAGCAGAGAAGAA 59
||||||||| |||||| |||||||||||||||||| |||||||||||||||||||| ||
Sbjct 45 TTTCCCGAG-AAAACTAAAAAAATGGCACCAAAAGCCGGAAAGAAACCAGCAGAGAA-AA 102
Query 60 ACCCGCCGCGgcagagaaagctccagcagtagaagaagagaaagtagcagagaaagcacc 119
| ||| | ||||||||||||||||| |||||||||||||||||| || ||||||||
Sbjct 103 A---GCC-C-GCAGAGAAAGCTCCAGC---AGAAGAAGAGAAAGTAGCCGAAAAAGCACC 154
Query 120 agcagagaagaaaccaaaagccggaaaaaagctaccaaaagaagcagTCACCGGAGGAGT 179
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 155 AGCAGAGAAGAAACCAAAAGCCGGAAAAAAACTACCAAAAGAAGCAGTCACCGGAGGAGT 214
Query 180 CGACAAGAAGAAGAAACGAGTCAAGAAAAGCACAGAGACATACAAGATCTATATCTTCAA 239
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 215 CGAGAAGAAGAAGAAACGAGTCAAGAAAAGCACAGAGACATACAAGATCTACATCTTCAA 274
Query 240 GGTGTTGAAACAAGTTCATCCAGATATTGGAATCTCAAGCAAAGCTATGGGGATTATGAA 299
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 275 GGTGTTGAAACAAGTTCATCCAGATATTGGAATCTCAAGTAAAGCTATGGGGATTATGAA 334
Query 300 CAGTTTTATCAACGATATATTCGAGAAACTTGCGCAAGAAGCTTCGAAATTAGCTAGGTA 359
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 335 CAGTTTTATCAATGATATATTCGAGAAACTTGCGCAAGAAGCTTCAAAATTAGCTAGGTA 394
Query 360 TAATAAGAAACCTACGATTACTTCTAGGGAGATTCAGACAGCTGTTAGACTTGTGTTACC 419
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 395 TAATAAGAAACCTACGATTACTTCTAGGGAGATTCAGACAGCTGTTAGACTAGTGTTACC 454
Query 420 TGGTGAACTTGCTAAGCATGCTGTTTCTGAAGGAACTAAAGCTGTTACTAAGTTTACTAG 479
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 455 TGGTGAACTTGCTAAGCATGCTGTTTCTGAAGGAACTAAGGCTGTTACTAAGTTTACTAG 514
Query 480 CTCTTAGGGTTT 491
|||||||| |||
Sbjct 515 CTCTTAGG-TTT 525
> AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein |
chr3:16913448-16914131 REVERSE LENGTH=684
Length=684
Score = 355 bits (192), Expect = 2e-97
Identities = 326/388 (84%), Gaps = 19/388 (5%)
Strand=Plus/Plus
Query 105 agcagagaaagcaccagcagagaagaaaccaaaagccgg-aaaaaagctaccaaaagaag 163
||| |||||||| || ||||||||||||||||||||||| || ||| || || || ||||
Sbjct 140 AGCCGAGAAAGCTCCTGCAGAGAAGAAACCAAAAGCCGGCAAGAAA-CTCCCGAAGGAAG 198
Query 164 -cagTCACCGGAGGAGTCGACAAGAAGAAGAA-ACG-AGTCAAGAAAAGCACAGAGACAT 220
| || |||| | | ||| ||||||||||| | | || ||||| || ||||| |
Sbjct 199 CCGGT-GCCGG-CG-G-CGATAAGAAGAAGAAGATGAAG--AAGAAGAGTGTTGAGACGT 252
Query 221 ACAAGATCTATATCTTCAAGGTGT-TGAAACAAGTTCATCCAGATATTGGAATCTCAAGC 279
|||||||||| ||||||||||| | ||||||||||||||||||||||||| || ||||||
Sbjct 253 ACAAGATCTACATCTTCAAGGT-TCTGAAACAAGTTCATCCAGATATTGGTATTTCAAGC 311
Query 280 AAAGCTATGGGGATTATGAACAGTTTTATCAACGATATATTCGAGAAACTTGCGCAA-G- 337
|||||||||||||||||||||||||| |||||||| || || |||||| ||| ||| |
Sbjct 312 AAAGCTATGGGGATTATGAACAGTTTCATCAACGACATCTTTGAGAAA-TTG-GCATCGG 369
Query 338 AAGCTTCGAAATTAGCTAGGTATAATAAGAAACCTACGATTACTTCTAGGGAGATTCAGA 397
|| | ||||| | || |||||||||||||| || |||||||||||| ||||||||||||
Sbjct 370 AATCGTCGAAGCTCGCGAGGTATAATAAGAAGCCGACGATTACTTCTCGGGAGATTCAGA 429
Query 398 CAGCTGTTAGACTTGTG-TTACCTGGTGAACTTGCTAAGCATGCTGTTTCTGAAGGAACT 456
| |||||||||||||| || |||||||| ||||| || |||||||||||||||||||||
Sbjct 430 CTGCTGTTAGACTTGTTCTT-CCTGGTGAGCTTGCGAAACATGCTGTTTCTGAAGGAACT 488
Query 457 AAAGCTGTTACTAAGTTTACTAGCTCTT 484
|| || || |||||||||||||||||||
Sbjct 489 AAGGCGGTGACTAAGTTTACTAGCTCTT 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24162624707
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5