BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933364
Length=815
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28950.1 | Symbols: ATEXPA6, ATEXP6, ATHEXP ALPHA 1.8, EXPA6... 1317 0.0
> AT2G28950.1 | Symbols: ATEXPA6, ATEXP6, ATHEXP ALPHA 1.8, EXPA6
| expansin A6 | chr2:12431341-12433595 REVERSE LENGTH=1386
Length=1386
Score = 1317 bits (713), Expect = 0.0
Identities = 781/815 (96%), Gaps = 0/815 (0%)
Strand=Plus/Plus
Query 1 TCTCAATCTCTCTCTCTGGTAATGGCAATGTTGGGTTTGGTTTTATCTGTTCTTACCACA 60
||||| |||||||||| | |||||||||||||||| |||||||||||||||||||| |||
Sbjct 93 TCTCAGTCTCTCTCTCAGATAATGGCAATGTTGGGCTTGGTTTTATCTGTTCTTACTACA 152
Query 61 ATTCTTGCATTGTCTGAAGCAAGAATCCCAGGAGTTTACAATGGAGGTGGTTGGGAAACT 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 153 ATTCTTGCATTGTCTGAAGCAAGAATCCCAGGAGTTTACAATGGTGGTGGTTGGGAAACT 212
Query 121 GCTCATGCCACTTTCTATGGTGGCTCTGATGCTTCTGGAACCATGGGAGGTGCTTGTGGT 180
||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 213 GCTCACGCCACTTTCTACGGTGGCTCTGATGCTTCTGGAACAATGGGAGGAGCTTGTGGT 272
Query 181 TATGGTAACTTATACAGCCAAGGCTATGGTGTGAACACGGCGGCTCTAAGCACGGCTCTG 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 273 TATGGTAACTTATACAGCCAAGGCTATGGTGTGAACACGGCGGCTTTAAGCACGGCTCTG 332
Query 241 TTCAACAATGGTTTTAGCTGTGGTGCTTGTTTTGAGCTCAAATGTGCGAGTGATCCAAGA 300
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 333 TTCAACAATGGTTTTAGCTGTGGTGCTTGTTTTGAGCTCAAATGTGCTAGTGATCCAAAA 392
Query 301 TGGTGCCATTCTGGTAGTCCTTCAATCTTCATCACTGCGACTAATTTCTGTCCTCCGAAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 TGGTGCCATTCTGGTAGTCCTTCAATCTTCATCACTGCGACTAATTTCTGTCCTCCGAAC 452
Query 361 TTTGCTCAGCCTAGTGACAATGGCGGTTGGTGTAACCCTCCTAGGCCTCACTTTGATCTT 420
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 453 TTTGCTCAGCCTAGTGACAATGGTGGTTGGTGTAACCCTCCTAGACCTCACTTTGATCTT 512
Query 421 GCTATGCCTATGTTCCTTAAGATTGCTGAGTATCGCGCCGGAATCGTCCCCGTCTCTTTC 480
|||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 513 GCTATGCCTATGTTTCTCAAGATCGCTGAGTATCGTGCCGGAATCGTCCCCGTCTCTTTC 572
Query 481 CGCCGTGTGCCATGCCGGAAAAGAGGAGGAATAAGGTTCACGATCAACGGTTTCCGTTAC 540
||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 573 CGCCGAGTGCCATGCCGGAAGAGAGGAGGAATAAGGTTCACAATCAACGGTTTCCGTTAT 632
Query 541 TTTAACTTGGTTCTAGTCACAAACGTCGCCGGCGTCGGAAACATAGTCCGACTAGGAGTG 600
|||||||||||||||||||| |||||||| |||| |||||||||||| || ||||| |||
Sbjct 633 TTTAACTTGGTTCTAGTCACTAACGTCGCTGGCGCCGGAAACATAGTGCGGCTAGGTGTG 692
Query 601 AAAGGAACACATACTTCGTGGATGAGCATGAGTCGTAACTGGGGGCAAAACTGGCAATCT 660
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 693 AAAGGAACACATACTTCGTGGATGACCATGAGTCGTAACTGGGGACAAAACTGGCAATCT 752
Query 661 AACTCAGTTTTGGTTGGTCAGTCACTTTCTTTTAGAGTCACAGGCAGTGACCGTAGAAGC 720
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 753 AACTCAGTTTTGGTTGGTCAGTCACTTTCTTTTAGAGTCACAAGCAGTGACCGTAGAAGC 812
Query 721 TCGACGTCGTGGAACATTGCTCCGGCGAATTGGCAGTTTGGTCAGACTTTCATGGGAAAG 780
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 813 TCGACGTCGTGGAACATTGCTCCGGCGAATTGGAAGTTTGGTCAGACTTTCATGGGAAAG 872
Query 781 AACTTCAGAGTCTGAGGGCATAATCGGAAACTCAT 815
||||||||||||||||||||| |||||||||||||
Sbjct 873 AACTTCAGAGTCTGAGGGCATTATCGGAAACTCAT 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39684976130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5