BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933369
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
ATCG01310.1 | Symbols: RPL2.2 | ribosomal protein L2 | chrC:152... 712 0.0
ATCG00830.1 | Symbols: RPL2.1 | ribosomal protein L2 | chrC:843... 712 0.0
ATCG01300.1 | Symbols: RPL23.2 | ribosomal protein L23 | chrC:1... 521 3e-147
ATCG00840.1 | Symbols: RPL23.1, RPL23 | ribosomal protein L23.1... 521 3e-147
> ATCG01310.1 | Symbols: RPL2.2 | ribosomal protein L2 | chrC:152806-154312
FORWARD LENGTH=825
Length=825
Score = 712 bits (385), Expect = 0.0
Identities = 389/391 (99%), Gaps = 0/391 (0%)
Strand=Plus/Plus
Query 361 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 60
Query 421 CAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGGCAGCATCATTGTGGTAAAGGT 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 CAAGTGAAATCCAATCCACGAAATAATTTGATCTGTGGGCAGCATCATTGTGGTAAAGGT 120
Query 481 CGTAATGCCAGAGGAATAATTACCGCAAGGCATAGAGGGGGAGGTCATAAGCGTCTATAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGTAATGCCAGAGGAATAATTACCGCAAGGCATAGAGGGGGAGGTCATAAGCGTCTATAC 180
Query 541 CGTAAAATAGATTTTCGACGAAATGCAAAAGACATATATGGTAGAATCGTAACCATAGAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTAAAATAGATTTTCGACGAAATGCAAAAGACATATATGGTAGAATCGTAACCATAGAA 240
Query 601 TACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGA 300
Query 661 TATATTTTACATCCTAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTT 720
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTT 360
Query 721 CCTATAAAAATGGGAAATGCCCTACCTTTGA 751
|||||||||||||||||||||||||||||||
Sbjct 361 CCTATAAAAATGGGAAATGCCCTACCTTTGA 391
> ATCG00830.1 | Symbols: RPL2.1 | ribosomal protein L2 | chrC:84337-85843
REVERSE LENGTH=825
Length=825
Score = 712 bits (385), Expect = 0.0
Identities = 389/391 (99%), Gaps = 0/391 (0%)
Strand=Plus/Plus
Query 361 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 60
Query 421 CAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGGCAGCATCATTGTGGTAAAGGT 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 CAAGTGAAATCCAATCCACGAAATAATTTGATCTGTGGGCAGCATCATTGTGGTAAAGGT 120
Query 481 CGTAATGCCAGAGGAATAATTACCGCAAGGCATAGAGGGGGAGGTCATAAGCGTCTATAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGTAATGCCAGAGGAATAATTACCGCAAGGCATAGAGGGGGAGGTCATAAGCGTCTATAC 180
Query 541 CGTAAAATAGATTTTCGACGAAATGCAAAAGACATATATGGTAGAATCGTAACCATAGAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTAAAATAGATTTTCGACGAAATGCAAAAGACATATATGGTAGAATCGTAACCATAGAA 240
Query 601 TACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGA 300
Query 661 TATATTTTACATCCTAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTT 720
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTT 360
Query 721 CCTATAAAAATGGGAAATGCCCTACCTTTGA 751
|||||||||||||||||||||||||||||||
Sbjct 361 CCTATAAAAATGGGAAATGCCCTACCTTTGA 391
> ATCG01300.1 | Symbols: RPL23.2 | ribosomal protein L23 | chrC:152506-152787
FORWARD LENGTH=282
Length=282
Score = 521 bits (282), Expect = 3e-147
Identities = 282/282 (100%), Gaps = 0/282 (0%)
Strand=Plus/Plus
Query 61 ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAAT 60
Query 121 CAATATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAATATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAA 120
Query 181 CTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAA 180
Query 241 AGAATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGAATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAA 240
Query 301 CCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA 342
||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA 282
> ATCG00840.1 | Symbols: RPL23.1, RPL23 | ribosomal protein L23.1
| chrC:85862-86143 REVERSE LENGTH=282
Length=282
Score = 521 bits (282), Expect = 3e-147
Identities = 282/282 (100%), Gaps = 0/282 (0%)
Strand=Plus/Plus
Query 61 ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAAT 60
Query 121 CAATATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAATATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAA 120
Query 181 CTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAA 180
Query 241 AGAATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGAATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAA 240
Query 301 CCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA 342
||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA 282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42347385921
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5