BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933374
Length=2164
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29040.1 | Symbols: | Exostosin family protein | chr2:12472... 2230 0.0
> AT2G29040.1 | Symbols: | Exostosin family protein | chr2:12472425-12474962
REVERSE LENGTH=2163
Length=2163
Score = 2230 bits (1207), Expect = 0.0
Identities = 1377/1460 (94%), Gaps = 8/1460 (1%)
Strand=Plus/Plus
Query 687 GATAACACCTCTGAACCCGAACCAAAAACTCAGAGAAAGTTTT-CATCGAATAATAATAA 745
||||||| |||| || | |||||||||||||||||||| |||| || |||||| |||||
Sbjct 706 GATAACATCTCTAAATCTGAACCAAAAACTCAGAGAAA-TTTTGTATTGAATAAGAATAA 764
Query 746 TACTTCCGAGGCGAAAAACAGAGTAATTTCCAAAAGAAACCAACCTAAAAGAGTCGGAAA 805
||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||| ||
Sbjct 765 TACTTCCAAGGCGAAAAACAGAGTAATTTCCAAGAGAAACCAACCTAGTAGAGTCGGTAA 824
Query 806 AGTTATGTTACGGCCAAGAGAAACGCGAAGTAACGATCCATGTAAAGGAAAATATGTGTA 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 AGTTATGTTACGGCCAAGAGAAACGCGAAGTAACGATCCATGTAAAGGAAAATATGTGTA 884
Query 866 TATGCACGAAGTTCCAGCTTTGTTTAACGAAGAGCTTCTCAAGAATTGTTGGACATTGAG 925
|||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 885 TATGCATGAGGTGCCAGCTTTGTTTAACGAAGAGCTTCTCAAGAACTGTTGGACATTGAG 944
Query 926 CAGGTGGACCGATATGTGCGAGTTAACATCGAATTTCGGATTAGGCCCTCGTCTACCAAA 985
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 945 CAGGTGGACTGATATGTGCGAGTTAACGTCGAATTTCGGGTTAGGCCCTCGTCTACCAAA 1004
Query 986 CATGGAGGGAGTTTCTGGTTGGTATGCCACAAACCAATTTACATTAGAAGTGATATTCCA 1045
|||||| ||||||||||||||||||||||||||||| || ||||| ||||| ||||||||
Sbjct 1005 CATGGAAGGAGTTTCTGGTTGGTATGCCACAAACCAGTTCACATTGGAAGTAATATTCCA 1064
Query 1046 CAACAGGATGAAGCAATACAAGTGCTTGACCAAAGACTCGTCTCTAGCTTCCGCGGTGTA 1105
||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1065 CAACAGGATGAAGCAGTACAAGTGCTTGACCAAAGACTCGTCTTTAGCTTCTGCGGTGTA 1124
Query 1106 TGTTCCTTACTATCCGGGTTTAGACTTGATGCGGTTTTTGTGGGGACCGTTCCCTTTCAT 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TGTTCCTTACTATCCGGGTTTAGACTTGATGCGGTTTTTGTGGGGACCGTTCCCTTTCAT 1184
Query 1166 GAGAGATGCTGCGGCGCTTGATTTGATGAAGTGGCTGAGGGAGAGTCCAG-AGTGGAAGA 1224
|||||||||||| ||||||||| | |||||||||||||||||||||| || |||||||||
Sbjct 1185 GAGAGATGCTGCCGCGCTTGATCTCATGAAGTGGCTGAGGGAGAGTC-AGGAGTGGAAGA 1243
Query 1225 GAATGGACGGCCGAGATCATTTTATGGTGGCTGGTCGTACCACTTGGGACTTTATGCGTA 1284
| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1244 GGATGGACGGACGAGATCATTTTATGGTGGCTGGTCGAACCACTTGGGACTTTATGCGTA 1303
Query 1285 CACCTGAGAATGAATCCGATTGGGGCAATAGGTTAATGATCTTACCGGAAGTAAGAAACA 1344
|||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1304 CACCAGAGAATGAATCCGATTGGGGAAATAGGTTAATGATATTACCGGAAGTAAGAAACA 1363
Query 1345 TGACGATGCTACTAATCGAATCAAGCCCATGGAACTACCACGGATTCGCGGTACCTTACC 1404
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1364 TGACGATGCTACTAATCGAATCAAGCCCATGGAACTACCACGGGTTCGCGGTTCCTTACC 1423
Query 1405 CGACCTATTTCCACCCTTCAACCTACGCAGAGATCATCCAATGGCAGATGAGAATGAGAA 1464
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1424 CGACCTATTTCCACCCTTCAACATACGCAGAAATCATCCAATGGCAGATGAGAATGAGAA 1483
Query 1465 GAATTAATCGTCGTTACCTATTCTCCTTTGTCGGTGCACCACGTCCAAATCTCGGTGACA 1524
||||||||||||||||| ||||||| ||||||||||| ||||| ||||| ||||||||||
Sbjct 1484 GAATTAATCGTCGTTACTTATTCTCATTTGTCGGTGCCCCACGACCAAACCTCGGTGACA 1543
Query 1525 GCATAAGAACCGAGATCATGGACCAATGCAAAGCTTCCACAA-GAAAATGCAAGCTTCTA 1583
||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 1544 GCATAAGAACCGAGATCATGGACCAATGCAAAGCTTCAA-AACGAAAATGCAAGCTTCTA 1602
Query 1584 GAATGCGTATCGGGTTCTCAAAAATGCTACAAACCCGACCAAATCATGAAATTCTTCTTG 1643
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1603 GAATGCATATCGGGTTCTCAAAAATGCTACAAACCCGACCAAATCATGAAATTCTTTTTG 1662
Query 1644 AGCTCAACATTCTGTCTCCAACCACCCGGTGACTCATACACACGCCGCTCCACTTTCGAC 1703
|||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1663 AGCTCAACGTTCTGTCTTCAACCACCAGGTGACTCATACACACGTCGCTCCACTTTTGAC 1722
Query 1704 TCCATCTTAGCAGGTTGTATACCGGTTTTCTTCCATCCGGGGTCAGCTTACGCTCAATAC 1763
||||||||||||||||||||||| |||||||| |||||||| |||||||| || ||||||
Sbjct 1723 TCCATCTTAGCAGGTTGTATACCAGTTTTCTTTCATCCGGGATCAGCTTATGCGCAATAC 1782
Query 1764 ATTTGGCATTTACCGAAAGATATCGCGAAATACTCTGTTTTTATACCAGAGAAAAACGTG 1823
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 1783 ATTTGGCATTTACCGAAAGATATCGCGAAATACTCTGTTTTTATTCCGGAGAAAAATGTG 1842
Query 1824 AAAGAAGGTAAAGTGAGTATAGAGAATGTTTTGAGTAGGATCCCAAGGACGAAAA-TTTT 1882
|||||||||||||||||||||||||||||||||||||| || || ||||| |||| ||||
Sbjct 1843 AAAGAAGGTAAAGTGAGTATAGAGAATGTTTTGAGTAGAATACCGAGGAC-AAAAGTTTT 1901
Query 1883 CGCGATGAGAGAACAAGTGATCAGACTGATACCGAGGTTAATGTATTTTAACCCGTCGAG 1942
||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1902 CGCTATGAGAGAACAAGTGATAAGACTGATACCGAGGTTAATGTATTTTCACCCGTCGAG 1961
Query 1943 TAAGAGCGAAGACACGGGAAGGTTTGAAGATGCATTCGATGTCGCGGTagaaggagtgtt 2002
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1962 TAAGAGTGAAGACACGGGAAGGTTTGAAGATGCATTCGATGTCGCGGTGGAAGGAGTTTT 2021
Query 2003 ggaaagagtggagggattaaggaagaggatagaggaagggaaagaggagaTTTTCGATTT 2062
||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 2022 GGAAAGAGTGGAGGGGTTAAGGAAGAGGATAGAGGAAGGCAAGGAGGAGATTTTTGATTT 2081
Query 2063 TCCGGAGCAGTATTCTTGGAAATATAATGTGTTTGGGAATGTTGAGAGGCATGAGTGGGA 2122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2082 TCCGGAGCAGTATTCTTGGAAATATAATGTGTTTGGGAATGTTGAGAGGCATGAGTGGGA 2141
Query 2123 TCCTTACTTCGATAGGCCTT 2142
||||||||||||| ||||||
Sbjct 2142 TCCTTACTTCGATCGGCCTT 2161
Score = 959 bits (519), Expect = 0.0
Identities = 630/681 (93%), Gaps = 17/681 (2%)
Strand=Plus/Plus
Query 21 ATGGCAATGGAGAAGTCTAGCTCAAAGTACAGAACCCAGTTCTGGTACGTTGCAATGGCC 80
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCAATGGAGAAGTCTAGCTCAAAGTACAGAACCCAGTTCTGGTACGTGGCAATGGCC 60
Query 81 TCTTTCCTCCTTTGGCTTGTCTTGCTTTACCTTTTTAGTTCTTCCGCTAAAACCGTTCAT 140
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCATTCCTCCTTTGGCTTGTCTTGCTTTACCTTTTTAGTTCTTCCGCTAAAACCGTTCAT 120
Query 141 AACCATGAGAGATTGTTCCGGCAAGAAAATGTCATCGATCTCCCTGTCGAAAACGTCCCA 200
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 AACCACGAGAGATTGTTCCGGCAAGAAAATATCATCGATCTCCCTGTCGAAAACGTCCCA 180
Query 201 CATAACCACGAATCC-GATGAAGCTCCTGTCGTT---GTA-TC-C-GAGGACGTTTCTGT 253
|| ||||||||| || |||||||||||||||||| || || | |||||| |||| ||
Sbjct 181 CAAAACCACGAA-CCTGATGAAGCTCCTGTCGTTAACGTTGTCTCTGAGGACATTTCCGT 239
Query 254 TGATAACAGCTCTCTTCCTGTCTCGGTCGATATATC-TCCGGATGATCAGATGTCAGAGG 312
||||||||||||||||||||| || |||||| | || ||||||||||||||||||||| |
Sbjct 240 TGATAACAGCTCTCTTCCTGTTTCTGTCGAT-TCTCCTCCGGATGATCAGATGTCAGAAG 298
Query 313 ACAAGAAGGTTGTGACTGATCTCGTTGAAGAACTCGAGAAAGAAAGGGTTGAGAATGAGA 372
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 299 ACAAGAAGGTTGTGACTGATCTCGTTGAAGAACTTGAGAAAGAAAGGGTTGAAAATGAGA 358
Query 373 AGAAGAGAGTTGATTCGGTTATCACAATTGGTCGGTCATCGAGGGCAAGGAGAGGACATC 432
|||||||||||||||||||| | | | |||| |||||||| | |||||||||||||||||
Sbjct 359 AGAAGAGAGTTGATTCGGTTGT-A-A-TTGGACGGTCATCTAAGGCAAGGAGAGGACATC 415
Query 433 GAGAGCCACGAAAGGCGAGATCTTCGGGTAGATTGGAGGCAGAAAAGAAAAAGGTTCGTC 492
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 416 GAGAGCCACGAAAGGCGAGATCTTCGGGTAGATTGGAGGCAGAGAAGAAAAGGGTTCGTC 475
Query 493 AAAAGGATGATGATGAGAGCAATGTGGAGAATAGTGATGAGAATCATCAAGCATTAGACA 552
|| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 476 GTAATGATGCTGATGAGAGCAATGCGGAGAATAGTGATGAGAATCATCAAGCATTAGACA 535
Query 553 AAGAACCGAATTTTTTCGAGCCTAGGAAAGACGTGGAACCAAAGAAAGCGCAAGTTGATG 612
|||||||||| ||||||||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct 536 AAGAACCGAACTTTTTCGAGGCTAAGAAAGACGTGGAACCAAAGAAAGCGCTAGTTGATG 595
Query 613 ATAATGACGACGAT-TTAGAGAGCAAGAGGGGTAAGGAATTGCCGAATGATT-TGTCCAG 670
|||||||||||||| || |||| |||||| || ||||| ||||||||||||| | |||||
Sbjct 596 ATAATGACGACGATCTT-GAGACCAAGAGAGGCAAGGAGTTGCCGAATGATTCT-TCCAG 653
Query 671 TAATGATGTTGAAGATGATAA 691
||||| |||||||||||||||
Sbjct 654 TAATGTTGTTGAAGATGATAA 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107328765210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5