BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933375

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G29045.1 | Symbols: LCR62 | low-molecular-weight cysteine-ri...   198    2e-50


> AT2G29045.1 | Symbols: LCR62 | low-molecular-weight cysteine-rich 
62 | chr2:12476372-12477107 FORWARD LENGTH=237
Length=237

 Score =  198 bits (107),  Expect = 2e-50
 Identities = 140/156 (90%), Gaps = 2/156 (1%)
 Strand=Plus/Plus

Query  32   ATTGAACAAAATATGGGATGCAT--CGGTTCTTGGCTCGTGCGGTGTGATTACAGACTGT  89
            |||||||||||||||||||||||  |||||||||||||||| ||||| |||||||| || 
Sbjct  61   ATTGAACAAAATATGGGATGCATGGCGGTTCTTGGCTCGTGTGGTGTCATTACAGATTGC  120

Query  90   AGTGGGACATGCAAGACTAAGTTTGGACAAGATGCGAGTGGCGATTGTGACCGCGACGGT  149
            |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct  121  AGTGGGTCATGCAAGACTAAGTTTGGACAAGATGCTAGTGGCGATTGTGACCGTGACGGT  180

Query  150  GGTGTTGGAACATGTGTTTGTGGTTATTCGTGTCCA  185
            |||   ||||||||| | ||||||||| | ||||||
Sbjct  181  GGTCAAGGAACATGTATGTGTGGTTATCCTTGTCCA  216



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10154085298


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5