BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933377
Length=4008
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29060.1 | Symbols: | GRAS family transcription factor | ch... 3138 0.0
AT2G29065.1 | Symbols: | GRAS family transcription factor | ch... 2615 0.0
AT1G07520.1 | Symbols: | GRAS family transcription factor | ch... 689 0.0
AT1G07530.1 | Symbols: SCL14, ATGRAS2, GRAS2 | SCARECROW-like 1... 291 5e-77
> AT2G29060.1 | Symbols: | GRAS family transcription factor |
chr2:12481744-12484087 FORWARD LENGTH=2171
Length=2171
Score = 3138 bits (1699), Expect = 0.0
Identities = 1987/2123 (94%), Gaps = 31/2123 (1%)
Strand=Plus/Plus
Query 1 ATTAGGGTTCTTGATTTCAACAATGGGTTCTTACTCCGCTGGCTTCCCTGGATCTTTGGA 60
||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||
Sbjct 53 ATTAGGGTTCTTGATTTCATCAATGGGTTCTTACTCAGCTGGCTTCCCTGGATCCTTGGA 112
Query 61 CTGGTTTGATTTTCCCGGTTTAGGAAACGGATTCTATCTAAATGATCAACCTTTGTTAGA 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 113 CTGGTTTGATTTTCCCGGTTTAGGAAACGGATCCTATCTAAATGATCAACCTTTGTTAGA 172
Query 121 GACTGGATCTGTTCCTCCTCCTCCAGAGCCATATTCGCAACAGAGTCTTGCTTCCGCGGA 180
| |||||||||||||||||||| ||| |||||| | ||||||| ||||||||| |||||
Sbjct 173 TATTGGATCTGTTCCTCCTCCTCTAGACCCATATCCTCAACAGAATCTTGCTTCTGCGGA 232
Query 181 TGCTGATTTCTCTGATTCTGTTTTGAAGTACATAAGTCAAGTTCTTATGGAAGAAGATAT 240
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 233 TGCTGATTTCTCTGATTCTGTTTTGAAGTACATAAGCCAAGTTCTTATGGAAGAGGACAT 292
Query 241 GGAAGATAAGCCTTGTATGTTTCATGATGCTTTGTCTCTTCAAGCAGCTGAGAAATCTCT 300
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 293 GGAAGATAAGCCTTGTATGTTTCATGATGCTTTATCTCTTCAAGCAGCTGAGAAGTCTCT 352
Query 301 CTATGAAGCTCTCGGCGAGAAGTACGCGGTTGATGATTCTGATCAGCCTTTG---ACTAC 357
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 353 CTATGAAGCTCTCGGCGAGAAGTACCCGGTTGATGATTCTGATCAGCCTCTGACTACTAC 412
Query 358 TACTAGCCTTGCTCAATTGGTTAGTAGTCCTGATGGTTCTTCTTATGCTTCAAGCATCAC 417
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 413 TACTAGCCTTGCTCAATTGGTTAGTAGTCCTGGTGGTTCTTCTTATGCTTCAAGCACCAC 472
Query 418 AACAACTTCATCTGATTCACAATGGAGTTTTGATTGTTTGGAGAATAATAGGCCTTCTTC 477
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 AACCACTTCCTCTGATTCACAATGGAGTTTTGATTGTTTGGAGAATAATAGGCCTTCTTC 532
Query 478 TTGGTTGCAGACACCGATCCCGAGTAACTTCGTTTTTCAGTCTACTTCTACTAGAACCAG 537
||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||
Sbjct 533 TTGGTTGCAGACACCGATCCCGAGTAACTTCATTTTTCAGTCTACATCTACTAG----AG 588
Query 538 TCCACAGTCTGTTGTTGGTAGTGGTAATGCGGTTTTCGGGTCAAGTTTTAGCGGTGATTT 597
| || |||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 589 --C-CA-----------GTAGCGGTAACGCGGTTTTCGGGTCAAGTTTTAGCGGTGATTT 634
Query 598 GGCTTCTAATATGTTTAACGATAGC-GAATTGGCGTTACAATTCAAGAAAGGGATGGAGG 656
|| ||||||||||||||| |||| | || |||||||||||||||||||||||||||||||
Sbjct 635 GGTTTCTAATATGTTTAATGATA-CTGACTTGGCGTTACAATTCAAGAAAGGGATGGAGG 693
Query 657 AAGCTAGTAAGTTCCTTCCTAAGAGCTCTCAGTT-G-----GATAACTCTGTTCCTTACA 710
|||||||||| ||||||||||||||||||||||| | ||||||||||||||| |||
Sbjct 694 AAGCTAGTAAATTCCTTCCTAAGAGCTCTCAGTTGGTTATAGATAACTCTGTTCCTAACA 753
Query 711 GATTAACCGGAAAGAAGAGCCATTGGCGCGAAGATGAACATTTGGCTGAAGAAAGAAGTA 770
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 754 GATTAACCGGAAAGAAGAGCCATTGGCGCGAAGAAGAACATTTGACTGAAGAAAGAAGTA 813
Query 771 GGAAGCAATCAGCTGTTTATGTTGATGAAACTGATGAGCTGACTGAGATGTTTGACAAGA 830
||| ||||| ||| ||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 814 AGAAACAATCTGCTATTTATGTTGATGAAACTGATGAGCTTACTGATATGTTTGACAATA 873
Query 831 TTCTGATATTTGGCGAGGCTAAGGAACAACCTGTATGCATTCTTAACGAGAATTTCCCGA 890
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 874 TTCTGATATTTGGCGAGGCTAAGGAACAACCTGTATGCATTCTTAACGAGAGTTTCCCTA 933
Query 891 AGGAACCCGCGAAAGCTTCATCGTTTGGTAAGAGTCATAAAAGCGAGAAACCGGATGCTA 950
||||||| |||||||||||| ||||| ||||||||| |||| |||| |||||||| ||||
Sbjct 934 AGGAACCTGCGAAAGCTTCAACGTTTAGTAAGAGTCCTAAAGGCGAAAAACCGGAAGCTA 993
Query 951 GTGGTAACAGTTATACAAAAGAGACACCTGATTTGAGGACAATGTTGGTATCTTGTGCTC 1010
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 994 GTGGTAACAGTTATACAAAAGAGACACCTGATTTGAGGACAATGCTGGTTTCTTGTGCTC 1053
Query 1011 AAGCTGTGTCGATTAATGATCGTAGAACCGCTGACGATCTGTTAAGTCAGATTAGGCAAC 1070
||||||| |||||||| ||||||||||| |||||||| |||||||||| ||| |||||||
Sbjct 1054 AAGCTGTTTCGATTAACGATCGTAGAACTGCTGACGAGCTGTTAAGTCGGATAAGGCAAC 1113
Query 1071 ATTCTTCATCTTACGGCGATGGAACAGAGAGATTGGCTCATTATTTCGCTAACAGTCTTG 1130
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1114 ATTCTTCATCTTACGGCGATGGAACAGAGAGATTGGCTCATTATTTTGCTAACAGTCTTG 1173
Query 1131 AAGCACGTTTGGCTGGTATAGGTACACAGGTTTATACCGCCTTGTCTTCCAAGAAAACAT 1190
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1174 AAGCACGTTTGGCTGGGATAGGTACACAGGTTTATACTGCCTTGTCTTCCAAGAAAACAT 1233
Query 1191 CTACTTCCGACATGTTGAAAGCTTACCAGACATACATATCAGTCTGTCCGTTCAAGAAAA 1250
||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1234 CTACTTCTGACATGTTGAAAGCTTATCAGACATATATATCAGTCTGTCCGTTCAAGAAAA 1293
Query 1251 TCGCAATCATATTCGCTAACCATAGTATTATGCGGTTGGCTTCCACTGCTAATGCCAAGA 1310
|||||||||||||||| |||||||||||||||||||||||||| | |||||||||||| |
Sbjct 1294 TCGCAATCATATTCGCCAACCATAGTATTATGCGGTTGGCTTCAAGTGCTAATGCCAAAA 1353
Query 1311 CTATCCACATCATAGATTTTGGGATATCTTATGGTTTCCAGTGGCCTTCTCTGATTCATC 1370
| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1354 CCATCCACATCATAGATTTTGGAATATCTGATGGTTTCCAGTGGCCTTCTCTGATTCATC 1413
Query 1371 GCCTTGCTTGGAGACGTGGTTCATCTTGTAAGCTTCGGATAACCGGTATAGAGTTGCCTC 1430
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 GACTTGCTTGGAGACGTGGTTCATCTTGTAAGCTTCGGATAACCGGTATAGAGTTGCCTC 1473
Query 1431 AACGGGGTTTTAGACCAGCAGAGGGAGTTATTGAGACGGGTCATCGCTTGGCTAAGTATT 1490
|||| |||||||||||||| ||||||||||||||||| |||| |||||||||||||||||
Sbjct 1474 AACGTGGTTTTAGACCAGCCGAGGGAGTTATTGAGACTGGTCGTCGCTTGGCTAAGTATT 1533
Query 1491 GTCAGAAGTTCAATGTTCCGTTTGAGTACAATGCGATTGCGCAGAAATGGGAAACAATCA 1550
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1534 GTCAGAAGTTCAATATTCCGTTTGAGTACAATGCGATTGCGCAGAAATGGGAATCAATCA 1593
Query 1551 AATTGGAGGACTTGAAGCTAAAAGAAGGCGAGTTTGTTGCGGTAAACTCTCTATTTCGGT 1610
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1594 AGTTGGAGGACTTGAAGCTAAAAGAAGGCGAGTTTGTTGCGGTAAACTCTTTATTTCGGT 1653
Query 1611 TTAGGAACCTCCTAGATGAGACGGTGGCTGTGCACAGCCCGAGAGATACGGTTCTGAAGC 1670
||||||| || ||||||||||||||||| ||||| |||||||||||||||||| ||||||
Sbjct 1654 TTAGGAATCTTCTAGATGAGACGGTGGCAGTGCATAGCCCGAGAGATACGGTTTTGAAGC 1713
Query 1671 TGATAAGGAAGATTAAA-CCAGATGTGTTCATCCCAGGGATCCTCAGTGGATCTTACAAT 1729
||||||||||||| ||| ||||| ||||||||||| ||||||||||| ||||| |||||
Sbjct 1714 TGATAAGGAAGAT-AAAGCCAGACGTGTTCATCCCCGGGATCCTCAGCGGATCCTACAAC 1772
Query 1730 GCGCCTTTCTTTGTCACGAGGTTTAGAGAAGTTCTGTTTCATTACTCGTCTCTGTTTGAC 1789
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1773 GCGCCTTTCTTTGTCACGAGGTTTAGAGAAGTTCTGTTTCATTACTCATCTCTGTTTGAC 1832
Query 1790 ATGTGTGACACGAATCTAACACGGGAAGATCCAATGAGGGTGATGTTTGAGAAAGAGTTC 1849
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1833 ATGTGTGACACGAATCTAACACGGGAAGATCCAATGAGGGTTATGTTTGAGAAAGAGTTC 1892
Query 1850 TATGGGAGGGAGATCATGAATGTGGTGGCGTGTGAGGGGACAGAGAGAGTGGAGAGGCCA 1909
|||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1893 TATGGGCGGGAGATCATGAACGTGGTGGCGTGTGAGGGGACGGAGAGAGTGGAGAGGCCA 1952
Query 1910 GAGAGTTATAAGCAGTGGCAGGCCAGGGCGATGAGAGCCGGGTTTAGACAGATTCCGCTG 1969
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1953 GAGAGTTATAAGCAGTGGCAGGCGAGGGCGATGAGAGCCGGGTTTAGACAGATTCCGCTG 2012
Query 1970 GATAAGGAACTGGTTCAGAAACTGAAGTTGCTGGTGGAAAGTGGATACAAAACGAAAGAG 2029
|| |||||||| |||||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct 2013 GAGAAGGAACTAGTTCAGAAACTGAAGTTGATGGTGGAAAGTGGATACAAACCCAAAGAG 2072
Query 2030 TTTGATGTTGATCAAGATTGTCACTGGTTACTTCAGGGCTGGAAAGGTAGAATTGTGTAT 2089
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 2073 TTTGATGTTGATCAAGATTGTCACTGGTTGCTTCAGGGCTGGAAAGGTAGAATTGTATAC 2132
Query 2090 GGTTCATCTGTTTGGGTTCCTTT 2112
||||||||| |||||||||||||
Sbjct 2133 GGTTCATCTATTTGGGTTCCTTT 2155
> AT2G29065.1 | Symbols: | GRAS family transcription factor |
chr2:12484843-12486983 FORWARD LENGTH=1989
Length=1989
Score = 2615 bits (1416), Expect = 0.0
Identities = 1750/1905 (92%), Gaps = 48/1905 (3%)
Strand=Plus/Plus
Query 2125 TGAGTATTTCGATGGAAACCCTAATTTTCTTACTGATCCAATGGAAGATCAGTATCCACC 2184
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 90 TGAGTATTTTGATGGTAACCCTAATTTGCTTACTGATCCAATGGAAGATCAGTATCCACC 149
Query 2185 ACCATCTGATACTTTGTTGAAATATGTGAGTGAGATTCTTATGGAAGAAAGTAATGGAGA 2244
||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 150 ACCATCTGATACTCTGTTGAAATACGTGAGTGAGATTCTTATGGAAGAGAGTAATGGAGA 209
Query 2245 TTATAAGCAGTCTATGTTCTATGATTCTTTGGCTTTACGAAAAACCGAAGAAATGTTGCA 2304
||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 210 TTATAAGCAATCTATGTTCTATGATTCATTGGCTTTACGAAAAACTGAAGAAATGTTGCA 269
Query 2305 GCAAGTCATTACTGATTCTCAAAATCAGTCTTTTAGT-C--CTGATTCTA-TGATTACTA 2360
|||||||||||||||||||||||||||||| |||||| | ||||||| | |||||||||
Sbjct 270 GCAAGTCATTACTGATTCTCAAAATCAGTCCTTTAGTCCTGCTGATTC-ATTGATTACTA 328
Query 2361 ATTCTTGGGATGCAAGCGGAAGTATC---GAATCCGCTTATTCGGCGGATCCGCAAATCG 2417
|||||||||||||||||||||| ||| ||||| ||||||||||| ||||||| |
Sbjct 329 ATTCTTGGGATGCAAGCGGAAGCATCGATGAATCGGCTTATTCGGCTGATCCGC--A--- 383
Query 2418 GTTTACCTGTGGATGAATTTATGGTTAAGAGTGTGTTTAGTGATGCAGAATCAGCTATAC 2477
||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 384 ----ACCTGTGAATGAAATTATGGTTAAGAGTATGTTTAGTGATGCAGAATCAGCTTTAC 439
Query 2478 AGTTTAAGAAAGGGGTTGAAGAAGCTAGTAAATTCCTTCCTAATAGTGACCAATGGGTTA 2537
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 440 AGTTTAAGAAAGGGGTTGAAGAAGCTAGTAAATTCCTTCCCAATAGTGATCAATGGGTTA 499
Query 2538 TCAATCTGGATATCGAGAGACCCGAAAGGCGTGGTTTGGTGAAAGAAGAGATGGGATTGG 2597
|||||||||||||||||||| |||||||||| | || ||| |||||||||||||||||||
Sbjct 500 TCAATCTGGATATCGAGAGATCCGAAAGGCGCGATTCGGTTAAAGAAGAGATGGGATTGG 559
Query 2598 ATCAGTTGAGAGGTAAGAAGAATCATGAAAGGGAAATAATTCTTGATTTTGAGGAAGTTA 2657
|||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 560 ATCAGTTGAGAGTTAAGAAGAATCATGAAA-GG-----------GATTTTGAGGAAGTTA 607
Query 2658 GGAGTAGTAAGCAATTTGCTAGTAACATAGAAGATGGGAAGATTACAGAGATGTTTGATA 2717
||||||||||||||||||||||||| |||||||| | ||| ||||||| ||||||||||
Sbjct 608 GGAGTAGTAAGCAATTTGCTAGTAATGTAGAAGATAGTAAGGTTACAGATATGTTTGATA 667
Query 2718 AGGTTTTGCTTCTTGACGGCGAATGCGATCCGCAAACATTGTTAGATAGCGAAATTCAAG 2777
||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 668 AGGTTTTGCTTCTTGACGGTGAATGCGATCCGCAAACATTGTTAGACAGCGAGATTCAAG 727
Query 2778 CGATTCGGAGTAATAAAAACAGAGGAGAG--A---AAG--G--GAAGAAGAAGAAGAGTC 2828
|||||||||||| ||| |||| ||||||| | ||| | |||||||||||||||||
Sbjct 728 CGATTCGGAGTAGTAAGAACATAGGAGAGAAAGGGAAGAAGAAGAAGAAGAAGAAGAGTC 787
Query 2829 AGGTGGTTGATTTTCGTACACTTCTCACTCATTGTGCACAAGCCATTTCGACAGGTGATA 2888
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 788 AAGTGGTTGATTTTCGTACACTTCTCACTCATTGTGCACAAGCCATTTCCACAGGAGATA 847
Query 2889 AAACTACGGCTCTTGATTTTCTGCTGCAGATACGGCAACAATCTTCGCCTCTTGGTGACG 2948
|||| ||||||||||| |||||| | |||||| ||||||| ||||||||||| |||||||
Sbjct 848 AAACCACGGCTCTTGAGTTTCTGTTACAGATAAGGCAACAGTCTTCGCCTCTCGGTGACG 907
Query 2949 CGGGGCAGAGACTGGCTCATTGTTTCGCCAATGCGCTTGAGGCTCGTCTACAGGGAAGTA 3008
||||||| ||||| |||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 908 CGGGGCAAAGACTAGCTCATTGTTTCGCTAACGCGCTTGAAGCTCGTCTACAGGGAAGTA 967
Query 3009 CCGGTCCTATGATCCAGATTTATTACAATGCTATAACCACCTCGTTGAAGGATACCGCTA 3068
|||||||||||||||||| ||||||||||||| ||||| | |||||||||||||| |||
Sbjct 968 CCGGTCCTATGATCCAGACTTATTACAATGCTTTAACCTCGTCGTTGAAGGATACTGCTG 1027
Query 3069 CCGATACACTTAAAGCGTACCGAGTTTATCTTTCTTCTTCTCCGTTTGTTACCTTGATGT 3128
| |||||| ||| |||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1028 CGGATACAATTAGAGCGTATCGAGTTTATCTTTCTTCGTCTCCGTTTGTTACCTTGATGT 1087
Query 3129 ATTTCTTCTCCATCAGGATGATTCTTGATGTGGCGAAAGATGCTCCGGTTCTTCATATAG 3188
|||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1088 ATTTCTTCTCCATCTGGATGATTCTTGATGTGGCTAAAGATGCTCCTGTTCTTCATATAG 1147
Query 3189 TCGATTTTGGGATTCTCTACGGGTTTCAGTGGCCGATGTTTATTCAGTAC-ATATCAGGT 3247
| |||||||||||||| ||||||||||| ||||||||||||||||||| | ||||||| |
Sbjct 1148 TTGATTTTGGGATTCTATACGGGTTTCAATGGCCGATGTTTATTCAGT-CTATATCAGAT 1206
Query 3248 CGAAATGATGTACCGCGGAAACTGCGGATTACTGGTATCGAGCTTCCTCAGTGCGGGTTT 3307
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1207 CGAAAAGATGTACCGCGGAAGCTGCGGATTACTGGTATCGAGCTTCCTCAGTGCGGGTTT 1266
Query 3308 C-GCCCTGCGGAACGAATAGAGGAGACAGGACGGAGATTGGCGGAGTACTGTAAACGGTT 3366
| |||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1267 CGGCCC-GCGGAGCGAATAGAGGAGACAGGACGGAGATTGGCTGAGTATTGTAAACGGTT 1325
Query 3367 CAATGTCCCGTTCGAGTACAAAGCCATTGCGTCTCAGAACTGGGAAACAATCGGGATAGA 3426
||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1326 TAATGTTCCGTTTGAGTACAAAGCCATTGCGTCTCAGAACTGGGAAACAATCCGGATAGA 1385
Query 3427 GGATCTCGATATACGACCAAACGAAGTCTTAGCGGTTAACGCCGGACTCAGGCTCAAGAA 3486
|||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||
Sbjct 1386 AGATCTCGATATACGACCAAACGAAGTCTTAGCGGTTAATGCTGGACTTAGACTCAAGAA 1445
Query 3487 CCTTCAAGACGAAACAGGAAGCGAAGAGAATTGCCCTAGAGACGCTGTCTTGAAGCTAAT 3546
||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1446 CCTTCAAGATGAAACAGGAAGCGAAGAGAATTGCCCGAGAGATGCTGTCTTGAAGCTAAT 1505
Query 3547 AAGAAACATGAACCCGGACGTTTTCATCCACACAG-TTGTCAACGGTTCATTCAACGCAC 3605
||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 1506 AAGAAACATGAACCCGGACGTTTTCATCCACGC-GATTGTCAACGGTTCATTCAACGCAC 1564
Query 3606 CTTTCTTCATCTCACGGTTCAAAGAAGCGGTTTACCATTACTCCGCTCTCTTCGACATGT 3665
| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1565 CCTTCTTTATCTCGCGGTTTAAAGAAGCGGTTTACCATTACTCCGCTCTCTTCGACATGT 1624
Query 3666 TTGATTCAACGCTACCTCGGGATAACAAAGAAAGAATTAGGTTCGAGAGGGAGTTTTACG 3725
||||||| ||| | ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1625 TTGATTCGACGTTGCCTCGGGATAACAAAGAGAGGATTAGGTTCGAGAGGGAGTTTTACG 1684
Query 3726 GGAGAGAGGCTATGAACGTGATAGCGTGCGAGGAAGCTGATCGAGTCGAGAGGCCTGAGA 3785
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1685 GGAGAGAGGCTATGAACGTGATAGCGTGCGAGGAAGCTGATCGAGTGGAGAGGCCTGAGA 1744
Query 3786 CTTACAGGCAATGGCAGGTGAGGATGGTTAGAGCTGGGTTTAAGCAGAAATCGATTAAGC 3845
||||||||||||||||||| || ||||||||||| ||||||||||||||| |||||||||
Sbjct 1745 CTTACAGGCAATGGCAGGTTAGAATGGTTAGAGCCGGGTTTAAGCAGAAAACGATTAAGC 1804
Query 3846 CTGAGCTGGTAGAGTTGTTTAG-GGAAAAGCTGAAGAAATGGCGTTACCATAAAGACTTT 3904
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1805 CTGAGCTGGTAGAGTTGTTTAGAGG-AAAGCTGAAGAAATGGCGTTACCATAAAGACTTT 1863
Query 3905 GTGGTTGATGAAAATAGTAAATGGTTGTTACAAGGCTGGAAAGGTCGAACTCTTTATGCT 3964
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1864 GTGGTTGATGAAAATAGTAAATGGTTGTTACAAGGCTGGAAAGGTCGAACTCTCTATGCT 1923
Query 3965 TCTTCTTGTTGGGTTCCTACGTAGTGATTGTTT-TGTAGTTTTGT 4008
|||||||||||||||||| | |||||||| || ||| |||||||
Sbjct 1924 TCTTCTTGTTGGGTTCCTGCCTAGTGATT-TTAGTGTTGTTTTGT 1967
> AT1G07520.1 | Symbols: | GRAS family transcription factor |
chr1:2309564-2311805 REVERSE LENGTH=2242
Length=2242
Score = 689 bits (373), Expect = 0.0
Identities = 1210/1598 (76%), Gaps = 122/1598 (8%)
Strand=Plus/Plus
Query 2446 GAGTGTGTTTAGTGATGCAGAATCAGCTATACAGTTTAAGAAAGGGGTT-GAAGAAGCTA 2504
|||| ||||||||||||||||||||| | | |||||||||| | ||||| || |||||||
Sbjct 546 GAGTATGTTTAGTGATGCAGAATCAGTTCTGCAGTTTAAGAGA-GGGTTAGAGGAAGCTA 604
Query 2505 GTAAATTCCTTCCTAATAGTGACCAATGGGT-TATCAATCTGGATATCGAGAGACCCGAA 2563
| || || |||||||||| ||| |||||| | | | ||||| | | | |||| |||
Sbjct 605 GCAAGTTTCTTCCTAATACTGATCAATGGATCT-TTAATCTTG--AGCCTGAGA-TGGAA 660
Query 2564 AGGCGTGGTT-TGGTGAAAGAAGA-GATGGGATTGGATCAG---T-T-GAGAGGTAAGAA 2616
| | || ||| |||||||| ||| || ||| ||| |||| | | || | || |||
Sbjct 661 A-GAGTTGTTCCGGTGAAAGTAGAGGA-AGGA-TGG-TCAGCTATCTCGAAAACTAGGAA 716
Query 2617 GAATCAT---GAAAGGG-A-AATAA-TTCTTGATTTTGAGGAAG-T--TAGGAGTAGTAA 2667
||||||| || ||| | || || |||| | ||||||| | ||||| |||||
Sbjct 717 GAATCATCACGAGCGGGAAGAAGAAGAAGATGATCTAGAGGAAGCTAGGAGGAGGAGTAA 776
Query 2668 GCAATTTGCTAGTAACAT-A-GAAGATGGGAAGATT-ACAGAGATGTTTGATAAGGTTTT 2724
|||||| || ||| | || | ||||||||||| ||| ||||| |||||||||||||||||
Sbjct 777 GCAATTCGC-AGTGA-ATGAGGAAGATGGGAA-ATTAACAGAAATGTTTGATAAGGTTTT 833
Query 2725 GCTTCTTGACGGCGAATGCGATCCGCA-AACATTGTTAGATAGCG-AAA---TTCAAGC- 2778
||||||||| || |||||||||||||| | || | |||| ||| ||| |||||||
Sbjct 834 GCTTCTTGATGGTGAATGCGATCCGCAGATTATCG-AAGATGGCGAAAATGGTTCAAGCA 892
Query 2779 -GATTCGGAGTAATAAAAACAGAGGAGAGAAAGGGAAGAAGAAGAAGAGTCAG-GTGGTT 2836
| || | || | || | | ||| | | | | || |||||||||| | | ||||
Sbjct 893 AGGCTCTG-GT--T-AAGA-A-AGG-CCG--CGCG-A-AA-AAGAAGAGTC-GAGCGGTT 939
Query 2837 GATTTTCGTACACTTCTCACTCAT-TGTGCACAAGCCATTTC-GACAGGTGATAAAACTA 2894
||||| || ||||||||||| | | || |||||| | |||| | |||| ||||| | ||
Sbjct 940 GATTTCCGCACACTTCTCACAC-TATGCGCACAATCTGTTTCTG-CAGGGGATAAGATTA 997
Query 2895 CGGCTCTTGATTTTCTGCTGCAGATACGGCAA-CAATCTTCGCCTCTTGGTGACGCGGGG 2953
||||| |||||| ||| ||||||| || || |||| ||| ||| ||||||| ||
Sbjct 998 CGGCTGATGATTTGCTGAGGCAGATAAGG-AAGCAATGTTCACCTGTTGGTGATGCATCA 1056
Query 2954 CAGAGACTGGCTCATTGT-TTCGCCAATGCGCTTGAGGCTCGTCTACAGGGAAGTACCGG 3012
|||||||| ||||||| | ||||||||||| |||||||| ||||| | || || || ||
Sbjct 1057 CAGAGACTAGCTCATT-TCTTCGCCAATGCACTTGAGGCGCGTCTTGAAGGTAGCACAGG 1115
Query 3013 TCCTATGATCCAGATTTATTACAATGCTATAACCACCTCGTTGAAGGATACCGCT--ACC 3070
|||||||||||| ||||||| || | || || || | || || || ||| ||
Sbjct 1116 AACTATGATCCAGAGTTATTACGATTCCATTTCCTCCAAG--AAACGA-ACAGCTGCACA 1172
Query 3071 GATACACTTAAAGCGTACCGAGTTTATCTT-TCTTCTTCTCCGTTTGTTACCTTGATGTA 3129
||| |||||| | || | || | |||| ||| | ||||||||| | || ||||| ||
Sbjct 1173 GAT--TCTTAAATCCTATAGTGTGT-TCTTGTCTGCGTCTCCGTTTATGACTTTGATCTA 1229
Query 3130 TTTCTTCTCCATCAGGATGATTCTTGATG-TGGCGAAAGATGCTCCGGTTCTTCATATAG 3188
||||||||||| || |||||||||||||| | || || |||||| |||||||||||||||
Sbjct 1230 TTTCTTCTCCAACAAGATGATTCTTGATGCT-GCCAAGGATGCTTCGGTTCTTCATATAG 1288
Query 3189 TCGATTTTGGGATTCTCTACGGGTTTC-AGTGGCCGATGTTTATTCAGTACATATCAG-G 3246
||||||||||||| || || || |||| |||||||||||||||| ||| || ||||| |
Sbjct 1289 TCGATTTTGGGATCCTTTATGG-TTTCCAGTGGCCGATGTTTATACAGCACTTATCAAAG 1347
Query 3247 TCGAAATGATGTACCGCGGAAACTGCGGATTACTGGTATCGAGCTTCCTCAGTGCGGGTT 3306
| || | || |||||||| |||||||| ||||||||| ||||||| ||| |
Sbjct 1348 A-GCAACCCCGGACTACGGAAACTACGGATTACCGGTATCGAGATTCCTCAACATGGGCT 1406
Query 3307 TCGCCCTGCGGAACGAATAGAGGAGACAGGACGGAGATTGGCGGAGTACTGTAAACGGTT 3366
||| || | ||| ||||| |||| ||||| || ||| || | ||||| || ||||||||
Sbjct 1407 TCGTCCAACTGAAAGAATACAGGATACAGGTCGAAGACTGACAGAGTATTGCAAACGGTT 1466
Query 3367 CAATGTCCCGTTCGAGTACAAAGCCATTGCGTCTCAGAACTGGGAAACAATCGGGATAGA 3426
||| || || || ||||| || ||||||||| ||||||||||||||||| ||| ||
Sbjct 1467 TGGTGTTCCATTTGAATACAATGCAATTGCGTCTAAGAACTGGGAAACAATCAAGATGGA 1526
Query 3427 GGA-TCTCGATATACGACCAAACGAAGT-CTTAGCGGTTAACGCCG-GACTCAGGCTCAA 3483
||| | || | || |||||||||||||| ||| || ||||| || | | ||| | ||||
Sbjct 1527 GGAGT-TCAAGATCCGACCAAACGAAGTTCTT-GCAGTTAATGCTGTG-CTCCGATTCAA 1583
Query 3484 GAACCTTCAAGACGAAA--C-AGGAAGCGAAGAGAATTGCCCTAGAGACGC-TGTCTTGA 3539
|||||| | ||| | | | ||| | |||||| ||||||| || |||| | ||| |
Sbjct 1584 GAACCTCCGAGATGTGATTCCAGG--G-GAAGAGGATTGCCCGAGGGACGGATTTCTAAA 1640
Query 3540 AGCTAATAAGAAACATGAACCCGGACGTTTTCATC--CAC-ACAGTTGTCAACGGTTCAT 3596
| || || ||| |||||||||| |||||||| || | | ||||| ||| || || |
Sbjct 1641 A-CTGATCAGAGACATGAACCCTAACGTTTTCCTCAGCTCGACAGT---CAATGGATCTT 1696
Query 3597 TCAACGCACCTTTCTTCATCTCACGGTTCAAAGAAGCG--GTTTACCATTACTCCGCTCT 3654
|||||||||| ||||||| | |||||||||||||||| |||| | | ||||| || ||
Sbjct 1697 TCAACGCACCGTTCTTCACCACACGGTTCAAAGAAGCTTTGTTT-C-ACTACTCGGCACT 1754
Query 3655 CTTCGACATGTTTGATTCAACGCTA-CCTCGGGATAACAAAGAAAGAATTAGGTT-CGAG 3712
||| ||| |||||| | | || || || | | ||| || || || | || |||
Sbjct 1755 CTTTGACTTGTTTGGTGCGACTCTGTCCAAAGAA-AACCCGGAGAGGAT-ACATTTCGA- 1811
Query 3713 AGGG-AGTTTTACGGGAGAGAGGCT-ATGAACGTGATAGCGTGCGA-GGAAGCT-GATCG 3768
|||| |||||||||||||||| | | ||||| |||||||| || || ||| | | ||| |
Sbjct 1812 AGGGGAGTTTTACGGGAGAGAAG-TGATGAATGTGATAGCATGTGAAGGA-G-TAGATAG 1868
Query 3769 AGTCGAGAGGCCTGAGACTTACAGGCAATGGCAGGTGAGGATGGTTAGAGCTGGGTTTAA 3828
||| ||||| |||||||| |||| ||||||||| ||||||||| | || ||||| |||||
Sbjct 1869 AGTGGAGAGACCTGAGACGTACAAGCAATGGCAAGTGAGGATGATAAGGGCTGGATTTAA 1928
Query 3829 GCAGAAATCGATTA-AGCCTGAGCTGGTAG-AGTTGTTTAGGGAAAAGCTGAAGAAATGG 3886
||||| | | | || | ||||| || | |||| |||||||||||| |||||||||||
Sbjct 1929 ACAGAAGCC-AGTGGAGGCAGAGCTTGT-GCAGTTATTTAGGGAAAAGATGAAGAAATGG 1986
Query 3887 CGTTACCATAAAGACTTTGTGGTTGATGAAAATAGTAAATGGTTGTTACAAGGCTGGAAA 3946
|||| |||||||||||||| |||||||| ||||||| ||||| |||||||| ||||||
Sbjct 1987 GGTTATCATAAAGACTTTGTCCTTGATGAAGATAGTAATTGGTTCTTACAAGGTTGGAAA 2046
Query 3947 GGTCGAA-C-TCTTTATGCTTCTTCTTGTTGGGTTCCT 3982
||||| | | |||| | |||||||||||||||| |||
Sbjct 2047 GGTCGCATCCTCTTC-T-CTTCTTCTTGTTGGGTCCCT 2082
> AT1G07530.1 | Symbols: SCL14, ATGRAS2, GRAS2 | SCARECROW-like
14 | chr1:2313582-2316469 REVERSE LENGTH=2787
Length=2787
Score = 291 bits (157), Expect = 5e-77
Identities = 411/527 (78%), Gaps = 43/527 (8%)
Strand=Plus/Plus
Query 182 GCTGATTTCTCTGATTCTGTTTTGAAGTACATAAGTCAAGTTCTTATGGAAGAAGATATG 241
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 469 GCTGATTTCTCTGATTCTGTTTTGAAGTATATAAGCCAAGTTCTTATGGAAGAGGATATG 528
Query 242 GAAGATAAGCCTTGTATGTTTCATGATGCTTTGTCTCTTCAAGCAGCTGAGAAATCTCTC 301
||||| |||||||||||||||||||| |||||| |||||||||| |||||||||||||||
Sbjct 529 GAAGAGAAGCCTTGTATGTTTCATGACGCTTTGGCTCTTCAAGCTGCTGAGAAATCTCTC 588
Query 302 TATGAAGCTCTCGGCGAGAAGTACGCGG-TT-GA-T---GATTCT---G---ATCAGCCT 349
||||| ||||| || ||||| ||| | || | | | |||| | |||| |||
Sbjct 589 TATGAGGCTCTTGGTGAGAAATACCCTTCTTCGTCTTCTGCTTCTTCTGTGGATCATCCT 648
Query 350 TTGACTACTA-CTAGCCTT-GCTCA-ATTGGTTAGTAGTCCTGATGGTTCTTCTTA-TGC 405
|| | | |||| | || | | |||| | || | | |||| ||| ||| ||
Sbjct 649 GAGAG-ATTGGCTAGTGATAGCCCTGAC-GGTTCTT-GTTCAGGTGGTGCTT-TTAGTGA 704
Query 406 TT-CA--AGCATCACAAC-A--ACTTCATCTGATTCACAATGGAGTTTTGATTGTTTGGA 459
|| | |||| ||| || | ||||| |||||||| || |||||| ||||| |||||||
Sbjct 705 TTACGCTAGCACCACTACCACTACTTCCTCTGATTCTCACTGGAGTGTTGATGGTTTGGA 764
Query 460 GAATAATAGGCCTTCTTCTTGGTTGCAGACACCGATCCCGAGTAACTTCGTTTTTCAGTC 519
||||| | ||||||| |||| || ||||| || |||||||| || ||||| |||||
Sbjct 765 GAATAG-A--CCTTCTT---GGTTACATACACCTATGCCGAGTAATTTTGTTTTCCAGTC 818
Query 520 TACTTCTAC-TAGAACCAGTC-CACAGTCTGTTGTTGGTAGTGGTAAT-G--CGGTTTTC 574
|||||||| | ||| ||| ||| | || || |||| |||||||| | |||||| |
Sbjct 819 TACTTCTAGGTCCAAC-AGTGTCACCGG-TGGTGGTGGTGGTGGTAATAGTGCGGTTTAC 876
Query 575 GGGTCAAGTTTTAGCGGTGATTTGGCTTCTAATATGTTTAACGAT-AGCGAATTGGCGT- 632
|| ||| ||||| ||| |||||||| ||| ||||||||||| ||| | |||||||| |
Sbjct 877 GGTTCAGGTTTTGGCGATGATTTGGTTTCGAATATGTTTAAAGATGAT-GAATTGGC-TA 934
Query 633 TACAATTCAAGAAAGGGATGGAGGAAGCTAGTAAGTTCCTTCCTAAG 679
| || |||||||||||| | |||||||||||||||||||||||||||
Sbjct 935 TGCAGTTCAAGAAAGGGGTTGAGGAAGCTAGTAAGTTCCTTCCTAAG 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 199714600083
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5