BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933387
Length=1762
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29130.1 | Symbols: LAC2, ATLAC2 | laccase 2 | chr2:12524889... 2806 0.0
> AT2G29130.1 | Symbols: LAC2, ATLAC2 | laccase 2 | chr2:12524889-12527747
REVERSE LENGTH=2070
Length=2070
Score = 2806 bits (1519), Expect = 0.0
Identities = 1683/1764 (95%), Gaps = 4/1764 (0%)
Strand=Plus/Plus
Query 1 TATTCAAACAAATATTGAACATGGTTACGTGGGTTTTGCATTATCTTCTCGTGGCATTTC 60
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 29 TATTCAAACAAATATTGAACATGGTTACGTGGGTTTTGAATTATCTTCTTGTGGCATTTC 88
Query 61 TGA-TTGCCATTAGTTACAACATCGATGCAGCATCTGCAGGAATCACGCGGCACTACCAG 119
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 T-ATTTGCCATTAGTTACAACATCGATGCAGCATCTGCAGGAATCACGCGGCACTACCAA 147
Query 120 TTCGATATTCAACTGAAAAACATCACAAGATTGTGCAAGACGAAAACAATCGTGACGGTC 179
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 148 TTCGATATTCAACTGAAAAACATCACAAGGTTGTGCAAGACAAAAACAATCGTGACGGTC 207
Query 180 AATGGAAAATTCCCAGGACCTAAG-GTTACCGCAAGAGAAGGAGATAATCTACAGATCAA 238
|| |||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 208 AACGGAAAATTCCCAGGACCT-AGAGTTACCGCAAGAGAAGGAGATAATCTACAAATCAA 266
Query 239 AGTTGTTAATCATGTCTCTAATAACATTTCTATCCACTGGCACGGTATCCGGCAGCTAAG 298
||||||||||||||| || |||||||||||||| || ||||| |||||||||||||||||
Sbjct 267 AGTTGTTAATCATGTATCCAATAACATTTCTATACATTGGCATGGTATCCGGCAGCTAAG 326
Query 299 GAGCGGATGGGCGGATGGACCATCGTATGTGACACAATGTCCAATTCGGACCGGACAAAG 358
||| || |||||||||||||| || ||||||||||||||||||||||||| ||||||||
Sbjct 327 GAGTGGTTGGGCGGATGGACCGTCCTATGTGACACAATGTCCAATTCGGATGGGACAAAG 386
Query 359 TTATGTTTACAACTTCACGGTGACTGGACAAAGAGGAACCTTGTGGTGGCATGCTCATAT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 TTATGTTTACAACTTCACGGTGACTGGACAAAGAGGAACCTTGTGGTGGCATGCTCATAT 446
Query 419 TCAATGGATGAGAGCTACCGTGTACGGACCTTTGATCATTCTCCCTAAACTCCATCAGCC 478
||| |||||||||||||| ||||||||||| || |||||||||||||| || ||||||||
Sbjct 447 TCAGTGGATGAGAGCTACTGTGTACGGACCATTAATCATTCTCCCTAAGCTTCATCAGCC 506
Query 479 TTACCCTTTTCCCAAACCCTACAAACAAGTCCCTATAATCTTTGGTGAATGGTTTAATGC 538
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 507 TTACCCTTTTCCCAAACCCTACAAACAAGTCCCTATACTCTTTGGTGAGTGGTTTAATGC 566
Query 539 TGATCCTCAAGCAGTGCTACAACAAGCTCTTCAGACGGGTGCAGGCCCAAATGCTTCTGA 598
|||||||||||||||| | |||||||||||||||||||||||||| |||||||| |||||
Sbjct 567 TGATCCTCAAGCAGTGGTGCAACAAGCTCTTCAGACGGGTGCAGGTCCAAATGCATCTGA 626
Query 599 TGCTCATACTTTTAATGGGCTTCCAGGTCCATTATACAATTGCTCTACAAAAGATACGTA 658
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 627 TGCTCATACTTTTAATGGGCTCCCAGGTCCATTATACAATTGCTCTACAAAAGACACATA 686
Query 659 CAAACTGATGGTAAAACCTGGAAAGACGTATCTACTACGATTAATCAATGCTGCACTCAA 718
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 CAAACTGATGGTGAAACCTGGAAAGACGTATCTACTACGATTAATCAATGCTGCACTCAA 746
Query 719 TGACGAACTCTTCTTCACCATAGCCAATCATACATTGACGGTCGTAGAAGCGGATGCTTG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 TGACGAACTCTTCTTCACCATAGCCAATCATACATTGACGGTCGTAGAAGCGGATGCTTG 806
Query 779 CTACGTTAAACCATTCCAAACCAACACCGTGCTTCTCGGTCCAGGCCAAACCACCAACGT 838
||||||||||||||| |||||||||| |||||||||||| || |||||||||||||| ||
Sbjct 807 CTACGTTAAACCATTTCAAACCAACATCGTGCTTCTCGGCCCGGGCCAAACCACCAATGT 866
Query 839 ACTACTCAAAACCAAACCTATTTATCCAAATGCAACCTTTTACATGTTGGCAAGACCGTA 898
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 867 ACTACTCAAAACCAAACCTATTTATCCAAATGCAACCTTCTACATGTTGGCAAGACCGTA 926
Query 899 CTTTACGGGCCAAGGAACAATTGATAATACAACCGTTGCGGGAATTCTCCAATACCATCA 958
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 927 CTTCACGGGCCAAGGAACAATTGATAATACAACCGTCGCGGGAATTCTCCAATACCAACA 986
Query 959 TCATTCCAAATCTTCTAAGAATCTTTCTATTATTAAACCATCTCTCCCTCCCATCAATAG 1018
|||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 987 TCATACCAAGTCTTCTAAGAATCTTTCTATCATTAAACCATCTCTCCCTCCCATCAATAG 1046
Query 1019 TACGAGCTACGCCGCAAATTTCACAAAAATGTTTAGAAGTTTGGCAAGTTCTACATTTCC 1078
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1047 CACTAGCTACGCCGCAAATTTCACAAAGATGTTTAGAAGTTTGGCAAGTTCTACATTTCC 1106
Query 1079 GGTAAACGTGCCAAAAACCGTGGACAAAAAATATTTCTTTACCGTCGGTCTAGGAACCAA 1138
|| ||||||||||||| |||||||||| ||||||||||| || ||||| ||||||||||
Sbjct 1107 GGCAAACGTGCCAAAAGTCGTGGACAAACAATATTTCTTTGCCATCGGTTTAGGAACCAA 1166
Query 1139 CCCTTGTCCTAAAAACCAAACATGCCAAGGACCAACTAATGCAACGAAATTTGCAGCATC 1198
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1167 CCCTTGTCCTAAAAACCAAACATGCCAAGGACCAACTAATACAACGAAATTTGCAGCATC 1226
Query 1199 TATCAACAATGTCTCTTTCATCTTACCAGACAAGACTTCTCTATTACAATCATACTTCGT 1258
||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1227 TATCAACAACGTGTCTTTCATCTTACCAAACAAGACTTCTCTATTACAATCATACTTCGT 1286
Query 1259 TGGCAAGTCCAACAATGTTTTCATGACCGATTTCCCAACTGCCCCtttttttCCATTTAA 1318
|||||| ||||| ||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1287 TGGCAAATCCAAGAATGTTTTCATGACCGATTTCCCAACTGCCCCTATTATTCCATTTAA 1346
Query 1319 TTACACGGGGACGCCACCAAACAACACAATGGTCTCAAGAGGGACCAAAGTTGTGGTCTT 1378
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 TTACACGGGTACGCCACCAAACAACACAATGGTCTCAAGAGGGACCAAAGTTGTGGTCTT 1406
Query 1379 GAAGTACAACACAACTGTTGAATTGGTGTTACAGGGCACTAGCATCTTGGGTATTGAGGC 1438
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GAAGTACAAGACAACTGTTGAATTGGTGTTACAGGGCACTAGCATCTTGGGTATTGAGGC 1466
Query 1439 CCACCCTGTACATCTTCATGGCTTCAACTTTTATGTGGTGGGTCAAGGCTTCGGCAATTT 1498
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1467 CCACCCTATACATCTTCATGGCTTCAACTTTTATGTGGTGGGTCAAGGCTTTGGCAATTT 1526
Query 1499 TAACCCGGCCCGTGACCCAAAGCAATATAATCTAGTCGATCCGGTCGAACGAAACACCAT 1558
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1527 TAACCCGGCCCGTGACCCAAAACATTATAACCTAGTCGATCCGGTCGAACGAAACACCAT 1586
Query 1559 CAATGTCCCTTCCGGTGGTTGGGTCGCCATCCGCTTCCTCGCCGATAATCCCGGTGTGTG 1618
|||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1587 CAATATCCCTTCCGGTGGATGGGTCGCCATCCGCTTCCTTGCCGATAATCCCGGTGTGTG 1646
Query 1619 GCTGATGCATTGCCACATTGAGATTCATTTGAGTTGGGGTCTGACCATGGCTTGGGTGGT 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1647 GCTGATGCATTGCCACATTGAGATTCATTTGAGTTGGGGTCTGACCATGGCTTGGGTTGT 1706
Query 1679 TTTGGACGGTGACCTTCCAAATCAGAAACTCCTTCCTCCACCCTCAGATTTCCCTAAATG 1738
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1707 TTTGGACGGTGACCTTCCAAATCAGAAGCTCCTTCCTCCACCCTCAGATTTCCCTAAATG 1766
Query 1739 TTGACTCTGACCGATCCAACGCCT 1762
|||||| |||||||||||||||||
Sbjct 1767 TTGACTATGACCGATCCAACGCCT 1790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87148146120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5