BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933392
Length=544
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29180.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 791 0.0
> AT2G29180.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages;
Has 34 Blast hits to 33 proteins in 16 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses -
0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:12543023-12543835
FORWARD LENGTH=701
Length=701
Score = 791 bits (428), Expect = 0.0
Identities = 504/539 (94%), Gaps = 12/539 (2%)
Strand=Plus/Plus
Query 1 GTGTGGGAGTGGAAGGAAAGATGTCTGCGACAACAACACCATCTCTATCTCTTTCAAATT 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 39 GTGTGGGAGTGGACGGAAAGATGTCTGCGACAACAACACCATCTCTATCTCTTTCAAATT 98
Query 61 TCACACCAAGATTCCAA-CATCCAGTTAAAA-CACACCATATATCTCCACTCTCTTGGTC 118
||| ||||||||||||| | |||||||||| | ||||||||||||||||||||||||||
Sbjct 99 TCAGACCAAGATTCCAAAC-TCCAGTTAAAGGC-CACCATATATCTCCACTCTCTTGGTC 156
Query 119 TGTTTCAAGAAGAAAGATCTTGTCTTCTAGAGTTCTTCGTGTTCAC-AAGGAAAAAACTC 177
|||||||||||||||||||||||||| ||| ||||||||| ||||| ||| ||||||| |
Sbjct 157 TGTTTCAAGAAGAAAGATCTTGTCTTTTAGGGTTCTTCGTCTTCACCAAG-AAAAAACCC 215
Query 178 AACTATGGAGAGTCTCTGCAACTCCGGAAGAAATTTCTCAAGAGATCGTTTCTTCTGATT 237
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 216 AACTATGGAGAGTCTCTGCAACTCCGGAAGAAATTTCCCAAGAGATCGTTTCTTCTGATT 275
Query 238 C-T-T-CATCT---GAAGCAATTGTGTCAAGTGGTGGTCAAGATGGTGTTGCTCTGATTA 291
| | | | ||| | |||| ||||||| |||||||| ||||||||||||||| ||||||
Sbjct 276 CATCTTCTTCTTCTGGAGCAGTTGTGTCTAGTGGTGGACAAGATGGTGTTGCTTTGATTA 335
Query 292 TACAAGTGCTTCTCTTTGTTGCATTTCTTGCTCTCACTGTTCTCACCATTGGTGTTGTGT 351
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 336 TACAAGTGCTTCTCTTTGTTGCATTTCTTGCTCTCACGGTTCTCACCATTGGTGTTGTGT 395
Query 352 ACATTGGAGTGACTGAGTTCCTTGGGaagagggagagagagaagtttgagaaagatgaag 411
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 396 ACATTGGAGTGACTGAGTTTCTTGGGAAGAGGGAGAGAGAGAAGTTTGAGAAAGACGAGG 455
Query 412 cagcgaagaagtctaagaaaggtgggaagaagaagGCAATGAGAGCCAAAGCTGGACCAA 471
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 456 CAGCAAAGAAGTCTAAGAAAGGTGGGAAGAAGAAGGCAATGAGAGCCAGAGCTGGACCAA 515
Query 472 GAGGTTTTGGTCAGAAGATTGAAGATGATGATATTGACATTGATCTTGAATGATTTTGT 530
||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 516 GAGGTTTTGGTCAGAAGATTGAAGATGATGACATCGACATTGATCTTGAGTGATTTTGT 574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26071522293
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5