BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933395
Length=2627
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29210.1 | Symbols: | splicing factor PWI domain-containing... 1810 0.0
> AT2G29210.1 | Symbols: | splicing factor PWI domain-containing
protein | chr2:12558051-12562348 FORWARD LENGTH=2922
Length=2922
Score = 1810 bits (980), Expect = 0.0
Identities = 1201/1304 (92%), Gaps = 30/1304 (2%)
Strand=Plus/Plus
Query 1335 AAGATTGCCTTCACCACCGGCTGA-GC--AAAGG-TTGCCTTCACCACCCGCTGGGCAAA 1390
||| |||||||||||||| || | || ||| || |||||||||||| ||| |||||
Sbjct 1479 AAGGTTGCCTTCACCACCCCCT-AGGCGTGCAGGATTACCTTCACCACCCCCTGCGCAAA 1537
Query 1391 GGTTACCTCCACCACTCCCTAGGCGTGCAGGATTACCTTCGCCAATGAGGGTTGGAGGAT 1450
|||| ||| |||||| |||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1538 GGTTGCCTTCACCACCCCCTAGGCGTGCAGGATTACCTTCACCAATGAGGATTGGAGGAT 1597
Query 1451 CTCATGCAGCCAATCACCTGGAATCACCATCACCCAGACCCAGTTCACTGTCCCCTCCTG 1510
||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||
Sbjct 1598 CTCATGCAGCCAATCACCTGGAATCACCATCACCCAG---C---TCATTGTCCCCTCCTG 1651
Query 1511 GTAGGAAAAAAGTGTTACCATCTCCACCTGTTAGAAGACGTAGGTCACTGACACCTG-CT 1569
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1652 GTAGGAAAAAAGTGTTACCATCTCCACCTGTTAGAAGACGCAGGTCACTGACACCTGAC- 1710
Query 1570 GAAGAGCGAGTCTCCCTGTCACCAGCTGGACGCCATGAAGCAGAATCCCCTTCACATGTC 1629
|||||||||||||||||||||| || |||||||||| | | |||||||||||| ||
Sbjct 1711 GAAGAGCGAGTCTCCCTGTCACAAGGTGGACGCCAT--A-C---TTCCCCTTCACATATC 1764
Query 1630 AAGCAAGGTGGATCTACGTCACCTGCTAGGGGTCAAGGTAAATCTTC-CCCT-A-CTCGA 1686
||||||| |||||||| |||||||| |||||||| |||||||||||| || | | |||||
Sbjct 1765 AAGCAAGATGGATCTATGTCACCTGTTAGGGGTCGAGGTAAATCTTCTCCTTCATCTCGA 1824
Query 1687 CATCAGAAAGCGCGCTCTCCTGTTCGGCGCAGATCACCAACTCCTGTCAACCGGCGAAAT 1746
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1825 CATCAGAAAGCGCGCTCTCCTGTTCGGCGCAGATCACCAACACCTGTCAACCGGCGAAGT 1884
Query 1747 CGAAGAT-TTCCATCTGCTTCACGATCACCTGATTACAGACGTAGGAGACGGTCTCCATC 1805
||||||| || |||||||||||||||||||||| | ||||| |||||||||||||||||
Sbjct 1885 CGAAGATCTT-CATCTGCTTCACGATCACCTGA-T--AGACGCAGGAGACGGTCTCCATC 1940
Query 1806 TTCGAGCAGGTCTCCTTCTAGGTCTCGATCACCTCCTGTTCTTCATAGATCTCCTTCTCC 1865
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1941 TTCGAGCAGATCTCCTTCTAGGTCGCGATCACCTCCTGTTCTTCATAGATCTCCTTCTCC 2000
Query 1866 ATGTGGAAGAAAACATCAGAGGGACAGAAGATCGCCTGGGCATCTATCTGAAGAACAAGA 1925
| ||||||||||||||||||| || |||||||| ||||||| ||||||||||||||||||
Sbjct 2001 ACGTGGAAGAAAACATCAGAGAGAGAGAAGATCTCCTGGGCGTCTATCTGAAGAACAAGA 2060
Query 1926 TAGGGTTCAAAATTCGAAGCTGTTAAAGAGAACTTCAGTGCCTGATACTGACAAGAGGAA 1985
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2061 TAGGGTTCAAAATTCCAAGCTGTTAAAGAGAACTTCAGTGCCTGATACTGACAAGAGGAA 2120
Query 1986 ACAATTACCAGAGGAGGTGTTAGAAGTTGGGCGTGTCGACCATTATAGGGAGCAAGAGAG 2045
||||||||||||| || || |||||||||||||||| || ||||||| |||||| |||||
Sbjct 2121 ACAATTACCAGAGAAGTTGCTAGAAGTTGGGCGTGTAGAACATTATAAGGAGCAGGAGAG 2180
Query 2046 AAAGAGTGATAAGTTGACAGAGAGGCGTTCCGGTCATAGAAC-CCATGGTTCACAGATGT 2104
|||||||||||||||| |||||| ||| || | ||| || || |||||||||||||||||
Sbjct 2181 AAAGAGTGATAAGTTGTCAGAGAAGCGATCTGTTCACAG-ACACCATGGTTCACAGATGT 2239
Query 2105 CCCCAGTAGAAAATTCAGAAGGAAAGAGTCGGCCTGTTTCTGGTAAAGTGAAAGACAGTG 2164
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 2240 CCCCAGTAGAAAATTCAGAAGGAAGGAGTCGGCCTGTTTCTAGTAAAGTGAAAGACAGTG 2299
Query 2165 AGCAGGTTGAGAAAGATGATAACAGCGACCTGGATGCAAACCTTTCCTCTGATTCTAAGG 2224
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2300 AGCAGGTTGAGAAAGAGGATAACAGCGACCTGGATGCAAACCTTTCCTGTGATTCTAAGG 2359
Query 2225 AAAGCAGCAGACATCGAACTAAGGATAAAAAGAGAAGAAAGAATAAAAGGTCTTCGAGGG 2284
| | || |||||||| || |||||||||||| ||||||||||||||||||||||| ||||
Sbjct 2360 ATACCATCAGACATCAAATTAAGGATAAAAATAGAAGAAAGAATAAAAGGTCTTCAAGGG 2419
Query 2285 AAGAAGTATCTTCAGATGATAATGGCAGTTCTGATTCTGACCTAGATGATaggaaggagg 2344
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 2420 AAGAAGTATCTTCAGATGATAATGGCAGTTCTGATTCCGACGTAGATGATAGGAAGGAGG 2479
Query 2345 ctaaaaggaggaggaaggaggagaagaaaacgagaaaggaggagaagaaacgtaggcgag 2404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2480 CTAAAAGGAGGAGGAAGGAGGAGAAGAAAACGAGAAAGGAGGAGAAGAAACGTAGGCGAG 2539
Query 2405 aggagagaCGTCGTAAAAGGGAAGAACGTCGTGGTGGAAAGGAGAAACATAAGAATCGAG 2464
||||||||| |||||||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct 2540 AGGAGAGACATCGTAAAAGGGAAGAACGTCGTGGTGGAAAGGAGAAGCATAAGAAACAAG 2599
Query 2465 AGCTATCTGATACTTCAGAGGGAGAAGCTGAGGCCCGTCCTAAGAATAAAAAAGGGGAGG 2524
|||| |||||||||||||| || |||| ||||||||||||||||| ||||||||||||||
Sbjct 2600 AGCTTTCTGATACTTCAGAAGGTGAAGTTGAGGCCCGTCCTAAGATTAAAAAAGGGGAGG 2659
Query 2525 AGTCTGATCCAAAGAGGCTTGAAATTGAGTTGCGAAACAAAGCACTCGAGTCATTGAAAG 2584
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2660 AATCTGATCCAAAGAGGCTTGAAATTGAGTTGCGAAACAAAGCACTCGAGTCATTGAAAG 2719
Query 2585 CAAAGAAGGGCATCAGCCACTAAGTCC-TTATCCAGCGTTATTT 2627
||||||||||||| ||||||||||||| || |||||||||||||
Sbjct 2720 CAAAGAAGGGCATTAGCCACTAAGTCCCTTGTCCAGCGTTATTT 2763
Score = 1779 bits (963), Expect = 0.0
Identities = 1313/1471 (89%), Gaps = 68/1471 (5%)
Strand=Plus/Plus
Query 1 TGCTTCCACAAACCCTAAACTATGTCCGGCGGTTTCTTCCGGGGTACTTCCGCCGAGCAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 TGCTTCCACAAACCCTAAACTATGTCCGGCGGTTTCTTCCGGGGTACTTCCGCCGAGCAG 144
Query 61 GATACTCGGTTTTCTAACAAGCAAGCCAAATTGATGAAGAGTCAGAAATTTGCTCCGGAG 120
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 145 GATACTCGGTTTTCTAACAAGCAAGCTAAATTGATGAAAAGCCAGAAATTTGCTCCGGAG 204
Query 121 TTGGAGAATCTGGTGGATGTGACTAAAGTGAAGATGGATGTAATGAAGCCTTGGATTGCG 180
|| ||||||||||||||| | |||||||||||||||||||| ||||| ||||||||||||
Sbjct 205 TTAGAGAATCTGGTGGATATCACTAAAGTGAAGATGGATGTTATGAAACCTTGGATTGCG 264
Query 181 ACTAGAGTCACTGAGCTTCTTGGTTTTGAAGATGAAGTGCTGATTAACTTTATCTATGGT 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 265 ACTAGAGTCACTGAGCTTCTTGGTATTGAAGATGAAGTGCTGATTAACTTTATCTATGGT 324
Query 241 CTGCTTGATGGGAAGGTAGTGAACGGTAAGGAGATTCAGATATCGTTAACTGGATTCATG 300
|||||||| |||||||||||||| |||||||||||||||||| || ||||||||||||||
Sbjct 325 CTGCTTGACGGGAAGGTAGTGAATGGTAAGGAGATTCAGATAACGCTAACTGGATTCATG 384
Query 301 GAGAAAAATACTGGCAAGTTTATGAAAGAACTTTGGACACTTCTTCTAAGCGCACAGAAT 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 GAGAAAAATACTGGCAAATTTATGAAAGAACTTTGGACACTTCTTCTAAGCGCACAGAAT 444
Query 361 AATTCAAGTGGTGTTCCACAGCAGTTTTTAGATGCTAGAGAAGCTGAAACAAAGAAGAAA 420
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 445 AATCCAAGTGGTGTTCCACAGCAGTTTTTAGATGCTAGAGCTGCTGAAACAAAGAAGAAA 504
Query 421 CAGGAAGAAGCAATACAAAAAGCAGATCGGTTAGCAAATGAAATAGAGAGGAAGAGGGAG 480
|||||||||| | | | | | | |||| ||| || | ||||||||||
Sbjct 505 CAGGAAGAAG-----C----A--A-A-----T-G-AAAT--AAT-GA-A-GAAGAGGGAG 540
Query 481 GGAGAAAAGAAGAACCCTGAGCATGATATATTGAGGAAAATAGACAGCGGCGTAGAACAC 540
||||| ||||||||| |||||| |||||||||||||||||||||||||| ||||||||
Sbjct 541 GGAGATAAGAAGAACATTGAGCACGATATATTGAGGAAAATAGACAGCGGTGTAGAACAT 600
Query 541 AAGGAGACAAATGGCATGGATACAAAACCTTCAAGAGATCGTCCAGAGGATGGGAGAAGG 600
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAGGAGACAAATGGCATGGATGCAAAACCTTCAAGAGATCGTCCAGAGGATGGGAGAAGG 660
Query 601 GCTGACGAGAAGAATGGTGTGAAAGAAAGGAGAAGGGATCTGATACCTCCACGTGGCAGA 660
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||
Sbjct 661 GCTGACGAGAAGAATGGTGTAAAAGAAAGGAGAAGGGATCTGATACCTCCACGTCGCGGA 720
Query 661 GATGCATCCCGCTCACCCCTTAGGGGGTCACGTTCTAGGTCAATCAGCAAAACAAATTCA 720
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 721 GATGCATCCCGCTCACCCCTTAGAGGGTCACGTTCTAGGTCAATCAGCAAAACAAATTCA 780
Query 721 GGCTCGAAAAGTTATTCTGGTGAACGGAAATCCAGGAGCTTGTCTCAATCATCAGATGCC 780
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 781 GGCTCGAAAAGTTATTCTGGCGAACGGAAATCCAGGAGCACATCTCAATCATCAGATGCC 840
Query 781 TCCATCTCACCTAGAAAGCGGAGATTGTCGAATTCAAGACGTAGATCCAGATCACGTTCC 840
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCCATCTCACCTAGAAAGCGAAGATTGTCGAATTCAAGACGTAGATCCAGATCACGTTCC 900
Query 841 TTGCGTAGGTCTCTATCTCCTCGGCGACGTACGATACATTCTCCTTAT-GGAAGCAGGTC 899
||||||||||||| |||||||||||||||| |||||| ||||||| | ||||||||||
Sbjct 901 GTGCGTAGGTCTCTGTCTCCTCGGCGACGTAGGATACACTCTCCTT-TCAGAAGCAGGTC 959
Query 900 ACGGTCACCTATTAGACGTCACAGGCGACATACGCCTGAGGGACGCCGTCAATCACCAGC 959
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 960 GCGGTCACCTATTAGACGTCACAGGCGACCTACGCATGAGGGACGCCGTCAATCACCAGC 1019
Query 960 CCCTTCAAGGCGTCGCCGTTCTCCATCCCCACCTGCTAGGA-GGCGCAGGTCACCATTCC 1018
||||||||| |||||||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct 1020 CCCTTCAAGACGTCGCCGTTCTCCATCCCCACCTGCTA-GACGGCGCAGGTCACCATCCC 1078
Query 1019 CACCTTCTAGGA-GGCGCAGGTCACCATCCCCACCTGCTAGGA-GGCGCAGGTCACCATC 1076
||||| ||| || |||||||||||||||| |||||||||| || ||| |||||| ||| |
Sbjct 1079 CACCTGCTA-GACGGCGCAGGTCACCATCACCACCTGCTA-GACGGCACAGGTCTCCAAC 1136
Query 1077 ACCACCTGTTA-G-A---C--G--------G----C-G-TA-G-GTCACCG---TCC-CC 1109
|||||||| | | | | | | | | || | ||||||| ||| ||
Sbjct 1137 ACCACCTGCAAGGCAGCGCAGGTCACCATCGCCCCCTGCTAGGCGTCACCGTTCTCCACC 1196
Query 1110 ACCTGCTAGGCCGCGCAGGTCACCATCGCCCCCTGCTAGGCGTCG-CCGT-T-CTCCACT 1166
|| ||||||| ||| ||||| || || || || |||||||| || || | || |||
Sbjct 1197 GCCAGCTAGGCGGCGTAGGTCTCCTTCACCGCCAGCTAGGCGGCGTAGGTCTCCTTCACC 1256
Query 1167 GCCCTTTAGGCGGCGTAGGTCTCCTTCACCGC-C-AGCTAGGCGGCGCAGGTCTCCATCT 1224
||| |||||||||||||||||| || || | | | | ||||| |||||||||||||
Sbjct 1257 GCCAGCTAGGCGGCGTAGGTCTCCATCTCCACTCTA-C-AGGCGTAACAGGTCTCCATCT 1314
Query 1225 CCACTCTATAGTCGTAACAGGTCACTGTCACCACTGGTTAAGCGGGAAAGGTCTGACTCA 1284
||||||||||| ||||||||||||| |||||| |||| |||||||| |||||||||||||
Sbjct 1315 CCACTCTATAGGCGTAACAGGTCACGGTCACCGCTGGCTAAGCGGGGAAGGTCTGACTCA 1374
Query 1285 CAAGGGAGGTCTCCGTCACCAGTGGCTAGGCGCAGGGATCCCACTGGGGCAAGATTGCCT 1344
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1375 CCAGGGAGGTCTCCGTCACCAGTGGCTAGGCTCAGGGATCCCACTGGGGCAAGATTGCCT 1434
Query 1345 TCACCA-CCGGCTGAGCAAAGGTTGCCTTCACCACCCGCTGGGCAAAGGTTACCTCCACC 1403
|||||| || ||||||||| |||||||||||||||| || |||||||| ||| ||||
Sbjct 1435 TCACCATCCAT-TGAGCAAAGATTGCCTTCACCACCCGTTGCACAAAGGTTGCCTTCACC 1493
Query 1404 ACTCCCTAGGCGTGCAGGATTACCTTCGCCA 1434
|| |||||||||||||||||||||||| |||
Sbjct 1494 ACCCCCTAGGCGTGCAGGATTACCTTCACCA 1524
Score = 270 bits (146), Expect = 4e-71
Identities = 190/211 (90%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 1012 CCATTCCCACCTTCTAGGA-GGCGCAGGTCACCATCCCCACCTGCTAGGA-GGCGCAGGT 1069
|||| ||||||| ||| || ||||||||||||||||||||||||||| || |||||||||
Sbjct 1042 CCATCCCCACCTGCTA-GACGGCGCAGGTCACCATCCCCACCTGCTA-GACGGCGCAGGT 1099
Query 1070 CACCATCACCACCTGTTAGACGGCGTAGGTCACCGTCCCCACCTGCTAGGCCGCGCAGGT 1129
||||||||||||||| |||||||| ||||| || | |||||||| |||| ||||||||
Sbjct 1100 CACCATCACCACCTGCTAGACGGCACAGGTCTCCAACACCACCTGCAAGGCAGCGCAGGT 1159
Query 1130 CACCATCGCCCCCTGCTAGGCGTCGCCGTTCTCCACTGCCCTTTAGGCGGCGTAGGTCTC 1189
|||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 1160 CACCATCGCCCCCTGCTAGGCGTCACCGTTCTCCACCGCCAGCTAGGCGGCGTAGGTCTC 1219
Query 1190 CTTCACCGCCAGCTAGGCGGCGCAGGTCTCC 1220
|||||||||||||||||||||| ||||||||
Sbjct 1220 CTTCACCGCCAGCTAGGCGGCGTAGGTCTCC 1250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130434051800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5