BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933396
Length=1904
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29250.1 | Symbols: | Concanavalin A-like lectin protein ki... 1234 0.0
> AT2G29250.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr2:12578909-12580780 REVERSE LENGTH=1872
Length=1872
Score = 1234 bits (668), Expect = 0.0
Identities = 1373/1706 (80%), Gaps = 77/1706 (5%)
Strand=Plus/Plus
Query 27 TACCTCCAAATCGATAACTTTATCAATAATCTTCCTATTATACCTAGTTTCTTGCGTCTC 86
||||| ||||||||| || ||||||||||||||||| |||| || ||||||| |||||
Sbjct 9 TACCTATAAATCGATAGCTGTATCAATAATCTTCCTACTATA-CT--TTTCTTGTGTCTC 65
Query 87 AAGCCAGCGAGAAACCAAGTTTCTAAACCATGGCTTTCTCGG-AGCTAATTTCCTCAAGT 145
||| || | | ||||||| ||||| |||||||||||||| || ||||||| |||||||||
Sbjct 66 AAGTCAACAACAAACCAAATTTCTTAACCATGGCTTTCT-GGAAGCTAATCTCCTCAAGT 124
Query 146 TTGGCTCCTCAAAGATCCACTCGAGTGGCCTCTTGGAGCTGACAAACACTTCGATGAGGC 205
|||||| || ||||||||| ||||||||| ||||||| |||||||||||||||||||||
Sbjct 125 CTGGCTCGTCCAAGATCCACCCGAGTGGCCACTTGGAGTTGACAAACACTTCGATGAGGC 184
Query 206 AAATTGGTCAAGCTTTTCATGGATTTCCCATATCC-TTCTTAAACCCAAACTCCTCCAAT 264
|||| ||||||||||||||||| ||||||||| || ||||||||||| |||||||| |||
Sbjct 185 AAATAGGTCAAGCTTTTCATGGCTTTCCCATA-CCATTCTTAAACCCCAACTCCTCAAAT 243
Query 265 TCAGTATCTTTCTCGACGAGTTTCGTCTTCGCCATCACTCCAGGACC-AACGACACCAGG 323
| ||||||||| | || || |||||||| ||||||||||||||||| || |||||||
Sbjct 244 TTGGTATCTTTCCCCACAAGCTTCGTCTTTGCCATCACTCCAGGACCTGGCG-CACCAGG 302
Query 324 CCACGGCTTGAGC-TTCGTTATCTCTCCGTCGATGGACTTTA-CTGGAGCCTTTCCCAGC 381
||||||||| ||| || || || || || ||| ||||||||| | || ||||| || |||
Sbjct 303 CCACGGCTT-AGCTTTTGTCATTTCACCCTCGCTGGACTTTAGC-GGGGCCTTACCAAGC 360
Query 382 AATTATCTTGGCCTTTTCAACACATCCACCAATGGAAACCCCTCAAACCGCATTCTCGCA 441
|||||||| ||||| ||||| || |||| |||||||||| ||| || ||||||| |||
Sbjct 361 AATTATCTAGGCCTATTCAATACCTCCAACAATGGAAACTCCTTGAATTGCATTCTTGCA 420
Query 442 GTTGAGTTCGACACGGTGCAATCAGTTGAAATGAAAGATATTGATGATAATCACGTAGCC 501
||||| |||||||| ||||| | ||||| |||| |||||||||||||| || || |
Sbjct 421 GTTGAATTCGACACTGTGCAGGCCGTTGAGTTGAACGATATTGATGATAACCATGTTGGT 480
Query 502 ATCGACCAAAATGGGGTGGTCTCCATTGAATCTGCC-CCGGCTGCAT-TTTTCGATGACC 559
|| |||| || || ||| |||||||||| ||| || || |||| || |||| |||||||
Sbjct 481 ATAGACCTCAACGGAGTGATCTCCATTGAGTCTACCTCC-GCTGAATATTTT-GATGACC 538
Query 560 GCGAGGCGAAGAACATAAGTCTGAAGCTGGCAAGTGGGGAGCCAATAAGAGTTTGGGTCG 619
| ||||| |||||||||||| ||| |||||| |||||| | ||||||||||| ||| |||
Sbjct 539 GAGAGGCAAAGAACATAAGTTTGAGGCTGGCGAGTGGGAAACCAATAAGAGTCTGGATCG 598
Query 620 AATACAACGCGACTGAGATGATACTCAATGTCACATTAGCTCCTCTAGATCGTTTGAAAC 679
|||||||||| ||||||| ||| |||||||||||||| ||||||||||||||| ||| |
Sbjct 599 AATACAACGCAACTGAGACGATGCTCAATGTCACATTGGCTCCTCTAGATCGTCCGAAGC 658
Query 680 C-AAGCTTGCCTCTCCTCTCTCGAAAACTAAATCTCTCGGGGATTATCTCTCAAGAGAAT 738
| ||| |||||||| |||||| ||||||||||||| || ||||| |||||| |||| |||
Sbjct 659 CAAAG-TTGCCTCTTCTCTCTAGAAAACTAAATCTTTCTGGGATCATCTCTGAAGAAAAT 717
Query 739 TATATTGGATTCGCTGCTGCCACGGGAACCGTTACGAGCTCACATTTTGTGCTAGGCTGG 798
||| |||||||| |||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 718 TATGTTGGATTCTCTGCAGCCACGGGAACTGTCACGAGCTCACATTTTGTGCTAGGCTGG 777
Query 799 AGCTTCAGCATCGAAGGGAAAGCATCAGACTTTGATATTACAAAGCTTCCTTCTCTTCCA 858
|||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 778 AGCTTCAGCATCGAGGGGAAAGCATCAGACTTTGATATCACGAAGCTTCCCTCTCTTCCA 837
Query 859 GACCCGCCACCGCCATTTTCTCCATCCCCAAATCCTCCGGTTTCAGCCAA-AAAGAATTC 917
||||||| ||| ||||| ||||||||||| | |||||||||||||| || ||| |||||
Sbjct 838 GACCCGCTACCTCCATTGTCTCCATCCCCGAGTCCTCCGGTTTCAGTCATGAAA-AATTC 896
Query 918 GAACAACACGAAGTTGATCATAGTC-TTCGTTGCATCAGGAACATTTGGACTCATGTTCT 976
|| ||||||| | |||||||| || || | |||||||| || ||||||| || || |||
Sbjct 897 GAGTAACACGATGCTGATCATAATCATT-GCTGCATCAGCAATATTTGGAATCTTGATCT 955
Query 977 TGGGCTTCTTAG-GTGTTTG-TGTTTTCCGTAGAAAT-AATACATTCTTCACAGGAGGTG 1033
| ||||||||| | ||||| | ||||| |||||| || | | |||||| ||||| |
Sbjct 956 TAAGCTTCTTAGCG-GTTTGCTTTTTTC-GTAGAACGGAA-A-A--CTTCACCGGAGGCG 1009
Query 1034 CAAGAAAATTCTCCTACCAGACGATTTCAAGTGCAACAGGTGGCTT---CAAC---A-GA 1086
|| | ||||||||| ||||||||||||| || || || || || || |||| | |
Sbjct 1010 CACGGAAATTCTCCCACCAGACGATTTCCAGCGCGACGGGAGGTTTTGACAACTCTAAGC 1069
Query 1087 TTTTTAGGAGAAGAAAACTCCGG-ACGTTTCTTCCGA-GGTCAGCTAGCACCAACGGAGA 1144
|||| ||||| | |||||| || | |||| || | || || || || || || ||||
Sbjct 1070 TTTTG-GGAGAGGGAAACTCTGGGA-GTTT-TTATAAAGGGCAACTTGCTCCTACAGAGA 1126
Query 1145 TAATCGCGGTAAAGAGAATTACTTGCAGCACAAGGCA-GCAAAGGCTTTCCATGATAGCT 1203
|||| || ||||||||||||||||||| ||||||||| | |||| | || | |||||
Sbjct 1127 TAATTGCCGTAAAGAGAATTACTTGCAACACAAGGCAAGAAAAGACAGCCC-TAATAGC- 1184
Query 1204 CAA-ATCGATGCAATCTCCAGGGTTAGACATAGAAACCTTGTTAATCTA-ATTGGATACA 1261
| | |||||||||||||||| ||| | ||| ||||| |||||| ||||| || || |||
Sbjct 1185 CGAGATCGATGCAATCTCCAAGGTAAAACAAAGAAATCTTGTTGATCTACAT-GGTTACT 1243
Query 1262 GCAGCAGAGGAAACGAGATCTATCTTGTTTACAAGTATGTTC-CTAACGGCAGTCTTGAT 1320
|||||| ||||||||||||||||||||||||| |||||||| | || | || || ||
Sbjct 1244 GCAGCAAAGGAAACGAGATCTATCTTGTTTACGAGTATGTTATC-AATAGAAGCCTAGAC 1302
Query 1321 CGCTTCCTGTTGAGCAATGAGCGACCAGTTTT-AAACTGG-TCAGATCGGTTCAATATCA 1378
|| ||| |||| ||||| || | ||||||| | ||| ||| | | | ||||| ||| |
Sbjct 1303 CGGTTCTTGTTCAGCAACGACCTACCAGTTCTCAAA-TGGGT-ACACCGGTTTTGTATTA 1360
Query 1379 TAAAGGGGATTGCCAAAGCA-TTGCAGTACCTTCACAG-TGAGTGT-CAGAGTAC-TCTC 1434
||||||| ||||| |||| || || | |||||| | |||| || || | || ||||
Sbjct 1361 TAAAGGGTATTGCGTCAGCACTT-CAACATCTTCAC-GCTGAG-GTTCAAAA-ACCTCTC 1416
Query 1435 ATTCATGGAAACGTCAAAAGCA-GTAATGTGCTCCTCGACGAAGAGCTGCACGCTC-AGC 1492
|| || ||||| |||||| ||| |||| || || | |||| |||||| |||||| | |
Sbjct 1417 ATACACGGAAATGTCAAA-GCAAGTAACGTTCTTTTGGACGGAGAGCTAAACGCTCGA-C 1474
Query 1493 TTGGAGATTATGGGCAAGGAAACAGGCAAAGCAAC-ACAGGTCATGTAGCTCCAGAGCTT 1551
| ||||| ||||| || |||| ||| || |||| | || || || || || ||||| ||
Sbjct 1475 TAGGAGACTATGGACATGGAAGCAGACACAGCA-CTACGGGACACGTTGCACCAGAACTA 1533
Query 1552 GTTGAGGCAACCGCAGTAC-CAACATGTGACACGGATGTGTTTGCATTTGGAGTGCTTA- 1609
|| | || | | | | | ||||||| ||| |||||||||| |||||||||| |||
Sbjct 1534 GTCAA--CA-CGGGAA-AGGCTACATGTGCCACAGATGTGTTTGAATTTGGAGTG-TTAA 1588
Query 1610 TAATTGAGATTGTATGTGGACGTACTGCAATTGAGCCGACAAAGCCACCAGAAGAGATCA 1669
| || |||||||| |||||| | | || || |||||||||||| ||| | ||||||||
Sbjct 1589 TCATGGAGATTGTTTGTGGAAGGAGAGCCATAGAGCCGACAAAGGAACCGGTAGAGATCA 1648
Query 1670 GTTTGGTAAATTGGGTGTTTCAAGGG 1695
|||| || || |||||| ||| ||||
Sbjct 1649 GTTTAGTGAACTGGGTGCTTCGAGGG 1674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94276623510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5