BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933400
Length=902
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29260.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1101 0.0
> AT2G29260.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr2:12582519-12584101 FORWARD LENGTH=1120
Length=1120
Score = 1101 bits (596), Expect = 0.0
Identities = 726/788 (92%), Gaps = 12/788 (2%)
Strand=Plus/Plus
Query 26 TGGTGCTTGACATGGCTTCTCACTTGTACATAAATCCACCTCAAAACcttcactttcttc 85
|||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||
Sbjct 6 TGGTGCTTGACATGGCTTCTCACTTGTACACAAATCCACCTCAAAACCTTCAC--T-TT- 61
Query 86 cttcttcttcttcttcttcCCTTAAACCTCACTTATACCTCTCTTTCAAACGCATAAACC 145
| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 62 -AT-TTCTTCTTCTTCTTCCCTTAAACCTCATTTATGCCTCTCTTTCAAACGCATAAACC 119
Query 146 C-ACAACCCAAATCCTCATCCTCCTCCGTCTTCGTCCCTTGCGCATCACAGAGCTCCATT 204
| | ||| ||||||||| ||||| |||||||||||||||| |||||||||||| ||||||
Sbjct 120 CTA-AACACAAATCCTCTTCCTCTTCCGTCTTCGTCCCTTACGCATCACAGAGTTCCATT 178
Query 205 GCCATTACTTCCAACGAAAGATGGTCTCTCAATGGATTGTCTGCTCTTGTCACCGGCGGC 264
|||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 179 GCCATTACCTCCAAGGAAAGATGGTCTCTCAATGGAATGTCTGCTCTTGTCACCGGCGGC 238
Query 265 ACTCGCGGAATCGGGCGTGCGATTGTGGAGGAATTGGCTGGTCTTGGAGCA-AAGGTTCA 323
||||| ||||| ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 239 ACTCGTGGAATTGGGCGTGCGATTGTGGAGGAATTGGCTGGTCTTGGAGCAGAA-GTTCA 297
Query 324 CACTTGCGCTCGAAATGAGAACGAGCTGGAGAATTGTTTGAGTGATTGGAACCGTTATGG 383
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 298 CACTTGCGCTCGGAATGAGTACGAGCTGGAGAATTGTTTGAGTGATTGGAACCGTTCTGG 357
Query 384 -TCTCAGAGTTGCGGGATCCGTCTGCGATGTCTCTGATCAATCTCAGAGAGAGGATTTGA 442
| || ||||||| |||||||| |||||||||||||||| |||||||||||||| |||||
Sbjct 358 TTTTC-GAGTTGCTGGATCCGTTTGCGATGTCTCTGATCGATCTCAGAGAGAGGCTTTGA 416
Query 443 TGGAGACTGTATCATCTGTCTTTGACGGGAAGCTTCATATCCTTGTAAACAATGTTGGGA 502
||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 417 TGGAGACCGTGTCATCTGTGTTTGAAGGGAAGCTTCATATCCTTGTAAACAATGTTGGGA 476
Query 503 CGAACATCAGGAAACCAATGGTAGAGTTTACGGCTGGAGAATTTTCGACTCTCATGTCGA 562
||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 477 CGAACATTAGGAAACCAATGGTAGAGTTTACTGCTGGAGAATTTTCGACTCTGATGTCTA 536
Query 563 CGAATTTCGAATCGGTTTTCCATTTATGTCAGCTTGCTTATCCGTTACTTAGAGCATCTG 622
||||||||||||||||||||||||||||||| ||||||||||| || ||||||| ||||
Sbjct 537 CGAATTTCGAATCGGTTTTCCATTTATGTCAACTTGCTTATCCATTGCTTAGAGAATCTA 596
Query 623 AGGCTGGCAGTGTTGTATCCATCTCTTCTGTTTCTGGTTTTGTCTCACTCAAGAATATGT 682
| ||||| |||||||| | |||||||||||||||||||||||| || |||||||||||||
Sbjct 597 AAGCTGGAAGTGTTGTGTTCATCTCTTCTGTTTCTGGTTTTGTTTCCCTCAAGAATATGT 656
Query 683 CGGTTCAATCTGCAACCAAAGGAGCAATTAATCAACTTACGAGAAGTCTGGCTTGCGAGT 742
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CGGTCCAATCTTCAACCAAAGGAGCAATTAATCAACTTACGAGAAGTCTGGCTTGCGAGT 716
Query 743 GGGCTAAGGACAATATAAGGGTCAATGCTGTTGCACCATGGTATATCAAAACATCGATGG 802
|||| || |||||||||||| ||||||||||||| || ||||||||||||||||| ||||
Sbjct 717 GGGCCAAAGACAATATAAGGATCAATGCTGTTGCCCCGTGGTATATCAAAACATCTATGG 776
Query 803 TAGAGCAA 810
| ||||||
Sbjct 777 TGGAGCAA 784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44055346919
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5