BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933422
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29480.1 | Symbols: ATGSTU2, GST20, GSTU2 | glutathione S-tr... 933 0.0
AT2G29460.1 | Symbols: ATGSTU4, GST22, GSTU4 | glutathione S-tr... 427 6e-119
AT2G29490.1 | Symbols: ATGSTU1, GST19, GSTU1 | glutathione S-tr... 289 3e-77
> AT2G29480.1 | Symbols: ATGSTU2, GST20, GSTU2 | glutathione S-transferase
tau 2 | chr2:12630198-12631321 REVERSE LENGTH=951
Length=951
Score = 933 bits (505), Expect = 0.0
Identities = 671/745 (90%), Gaps = 36/745 (5%)
Strand=Plus/Plus
Query 9 AGAGAGAGATCTAATGGCGAAGAAAGAAGAGAGTGTGAAGCTTCTAGGGTTTTGGATAAG 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 AGAGAGAGATCTAATGGCGAAGAAAGAAGAGAGTGTGAAGCTTCTAGGGTTTTGGATAAG 136
Query 69 CCCTTTTAGTCGTAGAGTCGAGATGGCTCTCAAAATTAAAGGCGTACCATACGAGTACTT 128
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 137 CCCTTTTAGTCGTAGAGTCGAGATGGCTCTCAAACTTAAAGGCGTACCATACGAGTACTT 196
Query 129 GGAAGAAGACTTACCCAAAAAGAGCACTTTACTTCTTGAGCTAAATCCGGTTCACAAGAA 188
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 197 GGAAGAAGACTTACCCAAAAAGAGCACTTTACTTCTTGAACTAAATCCGGTTCACAAGAA 256
Query 189 GGTTCCGGTTCTTGTCCACAATGAAAAAATATTATCCGAGTCACATTTAGTATTAAACAC 248
||||||||||||||| |||||||| ||| ||||||||||||||||| | | || | |
Sbjct 257 GGTTCCGGTTCTTGTTCACAATGATAAATTATTATCCGAGTCACATGT-G-AT----C-C 309
Query 249 CTTCTTGATTAACAATGTGATCCTCGAATACATCGACCAAACTTGGAATAACAATCCAAT 308
| | || || || | || || || || | || || | ||| |||| |
Sbjct 310 -T-C--GAATA-CA-TC-GA-CC---AA-ACTTGGAATAA-C----AATC-CAAT----T 347
Query 309 TCTACCTCAAGATCCCTACGAGAAAGCCATGGCTCGATTCTGGGCCAAGTTCGTCGATGA 368
|||||||| |||||||||||||| ||||||| ||| ||||||||||||||||| |||||
Sbjct 348 -CTACCTCACGATCCCTACGAGAAGGCCATGGTTCGGTTCTGGGCCAAGTTCGTTGATGA 406
Query 369 ACAGATCCTACCAGTTGGGTTCATGCCCCTAGTAAAAGCAGAGAAGGGAATAGATGTTGC 428
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 407 GCAGATCCTACCAGTTGGCTTCATGCCCCTAGTAAAAGCAGAGAAGGGAATAGATGTTGC 466
Query 429 TATTGAAGAGATTCGAGAAATGCTTATGTTTCTTGAGAAGGAAGTCACTGGAAAAGATTT 488
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 TATTGAGGAGATTCGAGAAATGCTTATGTTTCTTGAGAAGGAAGTCACTGGAAAAGATTT 526
Query 489 CTTTGGCAGAAAGACGATCGGATTCTTGGACATGGTTGCAGGAAGTATATTGATCCCATT 548
|||||| | ||||||||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 527 CTTTGGTGGCAAGACGATCGGATTCTTGGACATGGTTGCGGGAAGTAT---GATCCCGTT 583
Query 549 TTGTCTGGCTCGGGCTTGGGAATGTATGGGAATTGATATGACTCCAGAGGATACGTTTCC 608
|||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 584 TTGTCTTGCTCGGGCTTGGGAATGTTTGGGGATTGATATGACTCCAGAGGATACGTTTCC 643
Query 609 AGAATTAAACAGATGGATCAAGAAGTTGAATGAAGTTGAGATCGTAAGGGAATGTATACC 668
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 644 AGAATTAAACAGATGGATCAAGAACTTGAATGAAGTTGAGATCGTGAGGGAATGTATACC 703
Query 669 GCCAAAAGATAAACATATTGAGCGTATGAACAAAATTGTAGAGAGAGCAAAGTCTAC--- 725
|||||||| |||||||||||||||||||| |||||| |||||||||| ||||||||
Sbjct 704 TCCAAAAGAGAAACATATTGAGCGTATGAAGAAAATTATAGAGAGAGCTAAGTCTACGTT 763
Query 726 CTAAATTAATGACAACATCATAACT 750
|||||||||||| ||| ||||||||
Sbjct 764 CTAAATTAATGATAACTTCATAACT 788
> AT2G29460.1 | Symbols: ATGSTU4, GST22, GSTU4 | glutathione S-transferase
tau 4 | chr2:12626536-12627678 REVERSE LENGTH=906
Length=906
Score = 427 bits (231), Expect = 6e-119
Identities = 384/457 (84%), Gaps = 13/457 (3%)
Strand=Plus/Plus
Query 263 ATGTGATCCTCGAATACATCGACCAAACT-TGGAATAACAATCCAATTCTACCTCAAGAT 321
||||||||||||||||||||||||||| | ||||| |||||||||||||| |||||||||
Sbjct 290 ATGTGATCCTCGAATACATCGACCAAA-TATGGAAGAACAATCCAATTCTTCCTCAAGAT 348
Query 322 CCCTACGAGAAAGCCATGGCTCGATTCTGGGCCAAGTTCGTCGATGAACAGATCCTACCA 381
|| |||||||||||||||||| |||||||||||||||||| ||||||||| | ||||
Sbjct 349 CCTTACGAGAAAGCCATGGCTTTATTCTGGGCCAAGTTCGTTGATGAACAGGTTGGACCA 408
Query 382 GTTGGGTTCATGCCCCTAGTAAAAGCAGAGAAGGGAATAGATGTTGCTATTGAA-GAGAT 440
|| | || ||| | | | |||||||||||||||| |||| ||||| | | || |||
Sbjct 409 GTAGCTTTTATGTCTGTGGCAAAAGCAGAGAAGGGAGTAGAGGTTGC-AATCAAGGAGGC 467
Query 441 TCGAGAAATGC-TTATGTTTCTTGAGAAGGAAGTCACTGGAAAAGATTTCTTTGGCAG-A 498
|| |||| | | |||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 468 TCAAGAACT-CTTTATGTTTCTTGAGAAGGAAGTCACTGGAAAAGATTTCTTCGGTGGCA 526
Query 499 AAGACGATCGGATTCTTGGACATGGTTGCAGGAAGTATATTGATCCCATTTTGTCTGGCT 558
|| || || ||||| |||||| |||| ||||||||||| |||||| |||||||| |||
Sbjct 527 AA-ACAATTGGATTTTTGGACTTGGTCGCAGGAAGTAT---GATCCCGTTTTGTCTTGCT 582
Query 559 CG-GGCTTGGGAATGTATGGGAATTGATATGACTCCAGAGGATACGTTTCCAGAATTAAA 617
|| || ||||||| |||||||||||||||||| ||||||||| | ||||||||| ||||
Sbjct 583 CGAGG-TTGGGAAGGTATGGGAATTGATATGATTCCAGAGGAAAAGTTTCCAGAGCTAAA 641
Query 618 CAGATGGATCAAGAAGTTGAATGAAGTTGAGATCGTAAGGGAATGTATACCGCCAAAAGA 677
|||||||||||| || ||||| ||| |||||||||| || |||||||| || || | |||
Sbjct 642 CAGATGGATCAAAAATTTGAAAGAAATTGAGATCGTGAGAGAATGTATTCCTCCTAGAGA 701
Query 678 TAAACATATTGAGCGTATGAACAAAATTGTAGAGAGA 714
|||| ||||||| |||||| ||| ||||||| |||
Sbjct 702 GGAACAAATTGAGCATATGAAGAAAGTTGTAGAAAGA 738
> AT2G29490.1 | Symbols: ATGSTU1, GST19, GSTU1 | glutathione S-transferase
TAU 1 | chr2:12631378-12632473 REVERSE LENGTH=1003
Length=1003
Score = 289 bits (156), Expect = 3e-77
Identities = 203/226 (90%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 10 GAGAGAGATCTAATGGCGAAGAAAGAAGAGAGTGTGAAGCTTCTAGGGTTTTGGATAAGC 69
|||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 102 GAGAGATATCGAATGGCGGAGAAAGAAGAGAGTGTGAAGCTTCTAGGGTTTTGGGCAAGC 161
Query 70 CCTTTTAGTCGTAGAGTCGAGATGGCTCTCAAAATTAAAGGCGTACCATACGAGTACTTG 129
|||||||||||| |||||||||||||||||||| | |||||||| |||||||| ||||||
Sbjct 162 CCTTTTAGTCGTCGAGTCGAGATGGCTCTCAAACTCAAAGGCGTGCCATACGAATACTTG 221
Query 130 GAAGAAGACTTACCCAAAAAGAGCACTTTACTTCTTGAGCTAAATCCGGTTCACAAGAAG 189
|||||||| || ||||| |||| | |||| ||||| |||||||| ||| ||||||||||
Sbjct 222 GAAGAAGATTTGCCCAACAAGACCCCTTTGCTTCTGGAGCTAAACCCGCTTCACAAGAAA 281
Query 190 GTTCCGGTTCTTGTCCACAATGAAAAAATATTA-TCCGAGTCACAT 234
||||||||||||||||||||||| ||||||||| || |||||||||
Sbjct 282 GTTCCGGTTCTTGTCCACAATGACAAAATATTACTC-GAGTCACAT 326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36419756575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5