BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933429

Length=485
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G29530.3 | Symbols: TIM10 | Tim10/DDP family zinc finger pro...   520    7e-147


> AT2G29530.3 | Symbols: TIM10 | Tim10/DDP family zinc finger protein 
| chr2:12640800-12642332 REVERSE LENGTH=639
Length=639

 Score =  520 bits (281),  Expect = 7e-147
 Identities = 350/380 (92%), Gaps = 18/380 (5%)
 Strand=Plus/Plus

Query  119  GCTTGCTCAAACATGCTTTAATAAATGTGTGGATAAAAGGTACAAGGAAGCTGAGTTAAA  178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  254  GCTTGCTCAAACATGCTTTAATAAATGTGTGGATAAAAGGTACAAGGAAGCTGAGCTAAA  313

Query  179  CATGGGCGAGAATAGTTGCATCGACCGTTGTGTTTCCAAGTACTGGCAGGTAAATGGAAT  238
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  314  CATGGGTGAGAATAGTTGCATCGACCGTTGTGTTTCCAAGTACTGGCAGGTAAATGGAAT  373

Query  239  GGTTGGACAACTTCTAAGTGCTGGCAAG----CC------TCCAGTTTAAAGGCAATTAT  288
            ||||||||| ||||||||||||||||||    ||      ||||||||||||||||||||
Sbjct  374  GGTTGGACAGCTTCTAAGTGCTGGCAAGCCTCCCGTGTAATCCAGTTTAAAGGCAATTAT  433

Query  289  TATAGACC-AAAAGCTCATGGAGGGAACAAAACTCTGTTCTTTGtttttttCTAAAGCTT  347
            || ||||| |||||||||||||||||||| ||||||||||||||  ||||||||||| ||
Sbjct  434  TACAGACCAAAAAGCTCATGGAGGGAACACAACTCTGTTCTTTG--TTTTTCTAAAGTTT  491

Query  348  AAGGCAATCTTGTTTTTATTGTCAAGAAAATTGCATCACATTTTTGGCTCTGATTTGGAC  407
            ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct  492  AAGGCAATCTTGTTTTTATTGTCAAGAAAGTTGCATCACATTTTTGGCGCTGATTTGGAC  551

Query  408  AAAATTATGCAATTCCCTGTGAACCCATTATTACTA---AAGGGGTGAAATGAAATAACA  464
            ||| |||||||||||| |||||||||||||||| ||   |||||||||||||||||||||
Sbjct  552  AAA-TTATGCAATTCCATGTGAACCCATTATTATTACCTAAGGGGTGAAATGAAATAACA  610

Query  465  AAATCGAAAATCACAAAACA  484
            || |||||||| || |||||
Sbjct  611  AA-TCGAAAATAACGAAACA  629


 Score =  163 bits (88),  Expect = 1e-39
 Identities = 109/118 (92%), Gaps = 6/118 (5%)
 Strand=Plus/Plus

Query  1    ATTCAGGTACTGCTAAAAGAATGGCTTCTCCTAGTCCTATTCCCGCCGGCGTTACTAAGG  60
            |||||||||||||||||| |||||| | | |   ||||||||||| ||||||||||||||
Sbjct  70   ATTCAGGTACTGCTAAAAAAATGGC-T-T-C---TCCTATTCCCGTCGGCGTTACTAAGG  123

Query  61   AACAGGCGTTTAGTATGGCACAAACGGAGATGGAGTATCGGGTGGAACTCTTTAACAA  118
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  124  AACAGGCGTTTAGTATGGCACAAACGGAGATGGAGTATCGCGTGGAACTCTTTAACAA  181



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23107707620


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5