BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933443

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G29628.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   135    1e-31


> AT2G29628.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:12666832-12666957 
REVERSE LENGTH=126
Length=126

 Score =  135 bits (73),  Expect = 1e-31
 Identities = 112/128 (88%), Gaps = 13/128 (10%)
 Strand=Plus/Plus

Query  75   ATGCAGCCAAAAGCGAAAGGCTTTGCTGACGTGTCCACTTTCTCAGATA-TTT-T-G---  128
            |||||||| |||||||||||| |||||||||||||| |||||||||||| ||| | |   
Sbjct  1    ATGCAGCCTAAAGCGAAAGGC-TTGCTGACGTGTCCTCTTTCTCAGATATTTTGTCGAAA  59

Query  129  A----CGTCCGTTGATCAGGAT-TCTAAGATAAGGTACGTGAGGAGGAGAACGTCGTTTC  183
            |     |||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct  60   ATTGGTGTCCGTTGATCAGGATAT-TAAGATAAGGTACGTGAGGAGGAGAACGTCGTTTC  118

Query  184  ACGAGTAA  191
            ||||||||
Sbjct  119  ACGAGTAA  126



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9550872310


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5