BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg933443 Length=214 Score E Sequences producing significant alignments: (Bits) Value AT2G29628.1 | Symbols: | unknown protein; Has 30201 Blast hits... 135 1e-31 > AT2G29628.1 | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:12666832-12666957 REVERSE LENGTH=126 Length=126 Score = 135 bits (73), Expect = 1e-31 Identities = 112/128 (88%), Gaps = 13/128 (10%) Strand=Plus/Plus Query 75 ATGCAGCCAAAAGCGAAAGGCTTTGCTGACGTGTCCACTTTCTCAGATA-TTT-T-G--- 128 |||||||| |||||||||||| |||||||||||||| |||||||||||| ||| | | Sbjct 1 ATGCAGCCTAAAGCGAAAGGC-TTGCTGACGTGTCCTCTTTCTCAGATATTTTGTCGAAA 59 Query 129 A----CGTCCGTTGATCAGGAT-TCTAAGATAAGGTACGTGAGGAGGAGAACGTCGTTTC 183 | |||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 60 ATTGGTGTCCGTTGATCAGGATAT-TAAGATAAGGTACGTGAGGAGGAGAACGTCGTTTC 118 Query 184 ACGAGTAA 191 |||||||| Sbjct 119 ACGAGTAA 126 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9550872310 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5