BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933450

Length=539
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G34869.1 | Symbols:  | unknown protein; Has 17 Blast hits to...   427    5e-119


> AT5G34869.1 | Symbols:  | unknown protein; Has 17 Blast hits 
to 14 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr5:13061035-13062230 FORWARD 
LENGTH=1196
Length=1196

 Score =  427 bits (231),  Expect = 5e-119
 Identities = 452/554 (82%), Gaps = 34/554 (6%)
 Strand=Plus/Plus

Query  1    TCTCCAATCTCTGTTTTCGTCATGCTTCAGCTTCA---GC--C-TCTCTTTCCCCTCCCT  54
            |||| |||||||| |  ||||||||||||||||||    |  | ||||| || |||| ||
Sbjct  209  TCTCGAATCTCTGCTCCCGTCATGCTTCAGCTTCATTTTCAACATCTCTATCTCCTCTCT  268

Query  55   TCTTTTCCGGTGGATCTTCTCGGCGAGTTTGCTTCTT--C--GGTTTTCTCATCGCAGAG  110
            |||| || | |||||||||||||||| |||| || ||  |  | || | || ||||||||
Sbjct  269  TCTTATCTGATGGATCTTCTCGGCGAATTTG-TT-TTCCCAAGCTTCT-TC-TCGCAGAG  324

Query  111  GTTCAAATCGGGAGAAGTTTCTTTTCAACCCT-TCTGCGCCTCTTTGCAAAAATCAGAGC  169
            ||| | ||||| |||||  || | | ||  || | ||||| || ||| ||||||||||  
Sbjct  325  GTTTATATCGGAAGAAGAGTCATCT-AAGTCTATTTGCGCATCATTGGAAAAATCAGA-A  382

Query  170  CTTT-TAGCTCTAGATCTGGACCATCACCACA-GTCTCAAACAGTTTCTACTCACCGGAT  227
            |||| ||||||||||||||||||||||||| | | | |||||||||| ||||||||| ||
Sbjct  383  CTTTCTAGCTCTAGATCTGGACCATCACCA-ATGGCACAAACAGTTTGTACTCACCGAAT  441

Query  228  TTCGTTGATGGCAAGAGAATCTCTTGGACCGTCAGTTGCGCTT-TGTCCGGTGAGTTCGT  286
            ||||||||||||||||| ||||||||||||||| ||||| | | | ||||||||||||||
Sbjct  442  TTCGTTGATGGCAAGAGTATCTCTTGGACCGTCTGTTGCACCTAT-TCCGGTGAGTTCGT  500

Query  287  CGACGGCGCACGACGAT-TCCCAAAGCTGTCTAAAGGCTCCTCATT-CAATTC-TCAGGT  343
            ||||||||||||||| | || ||||||||||||   ||||| | || |  ||| ||||||
Sbjct  501  CGACGGCGCACGACG-TCTCTCAAAGCTGTCTAGTTGCTCCCC-TTGCT-TTCCTCAGGT  557

Query  344  CTGTG-CACTTCATCATCTCATCAGGTTCAGTTCTAAAGATTTACTACTCGATTACGATT  402
            ||||| |  ||||||| ||   ||  |||| |||||||||| | || ||| |||| || |
Sbjct  558  CTGTGTCG-TTCATCAACTTGCCAAATTCAATTCTAAAGATGTCCTGCTCAATTATGACT  616

Query  403  GGTAGAGGACTCCATGTTAGGGTAGTAGTGACATCTTTAGGCTGGATTTGCCACTGTCAA  462
            ||||| |||| ||| |||||||||||||||| |||||||||||||||||| |||| ||||
Sbjct  617  GGTAGTGGACGCCACGTTAGGGTAGTAGTGATATCTTTAGGCTGGATTTGTCACTATCAA  676

Query  463  TTACGAAACCTGTTGGAAT-TAGAAGTTTTGTTGCTATCCGATGCAAT-TTCATCTTAGA  520
            | ||||||||||||| ||| |||||||||| ||||||||||||| ||  || ||||| ||
Sbjct  677  TCACGAAACCTGTTG-AATCTAGAAGTTTTCTTGCTATCCGATGAAAAATT-ATCTTTGA  734

Query  521  AGCTTTTTGGATTA  534
            ||||| ||||||||
Sbjct  735  AGCTTCTTGGATTA  748



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25820351558


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5