BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933453
Length=1378
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70770.1 | Symbols: | Protein of unknown function DUF2359, ... 817 0.0
AT1G23170.2 | Symbols: | Protein of unknown function DUF2359, ... 401 7e-111
> AT1G70770.1 | Symbols: | Protein of unknown function DUF2359,
transmembrane | chr1:26688230-26691277 REVERSE LENGTH=2317
Length=2317
Score = 817 bits (442), Expect = 0.0
Identities = 855/1051 (81%), Gaps = 41/1051 (4%)
Strand=Plus/Plus
Query 265 TGTGGGCGTTTCG-CTGTACTCTTACTCATTTGGAAGCACAACAAGAAGGTGTC-AATTC 322
||||||| ||| | |||| ||| || |||| | ||||||||||| |||| | ||
Sbjct 799 TGTGGGC-TTTTGATTGTATTCTCACAGATTTAGCAGCACAACAAGGTGGTG-CTAAAGG 856
Query 323 TGGCAAGATTGGTGAACAACCTACTTCTCCCAAACCTCATGTGGTAGTATTTGTTACATT 382
||| |||| |||| |||| ||| || ||||| |||| |||| | |||||||| ||||
Sbjct 857 TGGGAAGAAGGGTGGTCAACAAACTACTTCCAAATCTCAGGTGGCAATATTTGTTGCATT 916
Query 383 GGCAATGGTATTACGTA-CAAGACCTGAAACTTTTACTTTTGCATTGCGGACTATTAGGC 441
|| |||||||| |||| ||| ||||| |||| ||| || ||||| ||| | |||
Sbjct 917 AGCGATGGTATTGCGTAGGAAG-CCTGATGCTTTGACTAATGTATTGCCAACTCTGAGGG 975
Query 442 AGAGGCGTATGTTTCAAGGACAGGACAAGATTCCGTTTACAGTTTGGATGATGGCTCAGG 501
||| | || || ||| || ||||| ||| ||||| ||||||||||||||||||||||||
Sbjct 976 AGAATCCTAAGTATCAGGGTCAGGATAAGCTTCCGGTTACAGTTTGGATGATGGCTCAGG 1035
Query 502 CCTCCCAGGGTTATTTATG-TGCAGGCTTGCT-TTCATGGGCGCATAACTTGTTACCAGT 559
||||||| ||| || || | || ||||||| | ||||||||| || ||||||||||| ||
Sbjct 1036 CCTCCCAAGGTGATATA-GCTGTAGGCTTG-TATTCATGGGCTCACAACTTGTTACCTGT 1093
Query 560 AGTCGGTAATTCGGACTGCAATCCTCAGTCAAGGGATCTCATCCTGCAGTTGGTTGAGAA 619
||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1094 TGTCGGTAATAAGAACTGTAACCCTCAGTCAAGGGATCTCATCCTGCAGTTGGTTGAGAA 1153
Query 620 AATTTTGTCGGATCCAATGGCTTGGACAATGCGTAGGAA-TCAAGCTATTAGGGAGAGAG 678
||||||| || |||||| |||| | || || | | | || | |||| ||||| || |||
Sbjct 1154 AATTTTGACGAATCCAAAGGCTCGTACCATACTT-GTAAATGGAGCTGTTAGGAAGGGAG 1212
Query 679 AGCGACTGATTCCACCTCCTTCATTTGAGATCTTGCTGCGGCTTACATTCCCTGCTTCAT 738
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1213 AGCGTTTGATTCCACCTCCTTCATTTGAGATCTTGTTGCGGCTTACATTCCCTGCATCAT 1272
Query 739 CTGCAAGAGTCAAAG-CTACAGAGAGATTTGAGGCAATTTATCCCTCACTGAAACAAGTG 797
|||||||||| |||| |||||||||| ||||||||||| ||||||| |||||| |||||
Sbjct 1273 CTGCAAGAGT-AAAGGCTACAGAGAGGTTTGAGGCAATATATCCCTTGCTGAAAGAAGTG 1331
Query 798 GCTCTTGCCGGTGCACCAGGAAGCGAGGCAATGAAACAAGTCATTA-AACAGATATTCAC 856
|||||||| ||||||||||||||| |||| ||||||||||||| | |||||||||||||
Sbjct 1332 GCTCTTGCTGGTGCACCAGGAAGCAAGGCGATGAAACAAGTCAC-ACAACAGATATTCAC 1390
Query 857 TTT-GTCTTTAAAATTAGCTAAAGAAGGAAATCCTACTTTGGCCAAGGAAGCTACAGAAA 915
||| | || | ||||||||| ||||||||||||| ||| |||||||||||||||| ||
Sbjct 1391 TTTTG-CTCTGAAATTAGCTGGAGAAGGAAATCCTGTTTTAGCCAAGGAAGCTACAGCAA 1449
Query 916 TCGCTATCTGGTGTGTGACCGAACA-TGTTGATTGCTGCGAGCACTGGGACAATCTCTAT 974
| |||||||||| ||||||| || | | ||||||||||| |||||||||||||||||||
Sbjct 1450 TTGCTATCTGGTCTGTGACCCAAAACT-TTGATTGCTGCAAGCACTGGGACAATCTCTAC 1508
Query 975 ATG-AGGAATTTAGCAGCTAGTGTTGCTGTTCTAAAAAAGCTTGTGGGCGATTGGAAGGA 1033
| | || ||| | | |||||||||||||||||| ||||||||||| | || ||||| ||
Sbjct 1509 AAGGAG-AATCTGGAAGCTAGTGTTGCTGTTCTTAAAAAGCTTGTTGAAGAATGGAAAGA 1567
Query 1034 TCATTCCCTCAAAATATTTTCATCACCGAGAA-ATACTCTCACTCTCGGTCAAACTATGA 1092
||||| ||||| ||| |||||||||| | || ||||||||||| | ||||||||
Sbjct 1568 GCATTCGGTCAAACTATCATCATCACCGA-ATGATGCTCTCACTCTCAACCGAACTATGA 1626
Query 1093 AGAGCTTCAGGCTGGAA-AACCAAAAAGCCATCACTGAAGGAGGAGCCAATGGTCCTCTT 1151
| ||||||||||| || ||| | | | ||||||||| ||||||||||||| | |||||
Sbjct 1627 AAAGCTTCAGGCTA-AAGAACGAGGAGGTCATCACTGAGGGAGGAGCCAATGCTTCTCTT 1685
Query 1152 TACAAAGAAGCTGACAAGTACT-GCAAATTGATCTCGCGGAGACTCTCC--TACAACCAT 1208
||||||||||||||||||| || ||||| ||||||| ||||||||||| | || |
Sbjct 1686 TACAAAGAAGCTGACAAGT-CTTGCAAAACGATCTCGGGGAGACTCTCCCGTGGAAG--T 1742
Query 1209 TACGGCCTCAAAGCTACTGC--TG--T---G-GTT-CTAGCTGCTGCAGGAGCCGCTGCT 1259
| ||||||||| || || | | | ||| ||||||||||||||||||||||||
Sbjct 1743 GGCTGCCTCAAAGGAACAGCCATTACTTTAGTGTTTCTAGCTGCTGCAGGAGCCGCTGCT 1802
Query 1260 GCAGTTGTTCTATCTTCCAACATGGAGCTTA 1290
|||| |||||||||||||||| |||| |||
Sbjct 1803 GCAGCTGTTCTATCTTCCAACCCGGAGGTTA 1833
> AT1G23170.2 | Symbols: | Protein of unknown function DUF2359,
transmembrane | chr1:8212556-8215807 FORWARD LENGTH=2307
Length=2307
Score = 401 bits (217), Expect = 7e-111
Identities = 681/901 (76%), Gaps = 47/901 (5%)
Strand=Plus/Plus
Query 157 TTATCGATG-TGATCAATGTTCCAGTGTGTGATATTCCTGAACCTA-TCTACAAAACATC 214
||||| | | ||||| || ||||| | | | ||||||||||| | | | || || |||||
Sbjct 796 TTATCTAAGTTGATCGATATTCCACTTTCTCATATTCCTGAAGC-AGTGTATAAGACATC 854
Query 215 TGTC-GATTGGATCAAACAA-GTTCCAGTAATGACACTCTCTG-G-CTTCATAGTGTGGG 270
| | |||||||| || ||| || ||| | | | |||| | | | ||| || ||||||
Sbjct 855 AG-CTGATTGGATTAACCAACGTCCCATTGA-GGCACT-T-GGAGCCTTTGTATTGTGGG 910
Query 271 CGTTTCG-CTGTACTCTTACTCATTTGGAAGCACAACAAGAAGGTGTCAATTCTGGCAAG 329
| || | |||| |||| || | |||| | |||||||| ||||||||| ||| |||
Sbjct 911 -GCTTGGATTGTATTCTTGCTGACTTGGCTGTACAACAAGGAGGTGTCAAGGGTGGTAAG 969
Query 330 ATTGGTGAACAACCTACTTCTCCCAAACCTCATG-TG-GTAGTATTTGTTACATTGGCAA 387
| || | ||||| ||||| | ||| |||| | || | | ||||||| | | ||||
Sbjct 970 AAAGGAGCACAACAGGCTTCTTCGAAATCTCAGGTTGCG-A-TATTTGTGGCGGTAGCAA 1027
Query 388 TGGTATTACGT-ACAAGACCTGAAACTTTTACTTTTGCATTGCGGACTATT-AGGCAGAG 445
|||| || ||| | || |||||| |||| ||| | ||||| ||| || ||| |||
Sbjct 1028 TGGTTTTGCGTAAGAA-ACCTGATGCTTTAACTAATATATTGCCAACT-TTGAGGGAGAA 1085
Query 446 GCGTATGTTTCAAGGACAGGACAAGATTCC-GTTTACAGTTTGGATGATGGCTCAGGCCT 504
| | || ||| |||||||| ||| |||| | |||||||||||||||||||||||||||
Sbjct 1086 TCCCAAGTATCAGGGACAGGATAAGCTTCCAG-TTACAGTTTGGATGATGGCTCAGGCCT 1144
Query 505 CCCAGGGTTATTTATGTGCAGGCTTGCTT-TCATGGGCGCATAACTTGTTACCAGTAGTC 563
|||| ||| || ||| | ||||||| | || ||||| || ||||||||||| || |||
Sbjct 1145 CCCAAGGTGATATATCAGTAGGCTTG-TACTCGTGGGCTCACAACTTGTTACCGGTGGTC 1203
Query 564 GGTAATTCGGACT-GCAATCCTCAGTCAAGGGATCTCATCCTGCAGTTGGTTGAGAAAAT 622
||| | | | ||||||||||||||||||||||||| || ||||||||||||| ||
Sbjct 1204 AGTAGCAAG-AGTTGCAATCCTCAGTCAAGGGATCTCATTCTTCAGTTGGTTGAGAGGAT 1262
Query 623 TTTGTCGGATCC-AATGGCTTGGACAATGCGTAGGAA-TCAAGCTATTAGGGAGAGAGAG 680
||||| | || || ||| |||| || | | | || | ||| ||||| || |||||
Sbjct 1263 CTTGTCCAACCCGAA-GGCCCGGACCATACTT-GTAAATGGGGCTGTTAGGAAGGGAGAG 1320
Query 681 CGACTGATTCCACCTCCTTCATTTGAGATCTTGCTGCGGCTTACATTCCCTGCTTCATCT 740
||| |||||||||||||||| |||||||||||| | || |||||||||||||| || ||
Sbjct 1321 CGATTGATTCCACCTCCTTCGTTTGAGATCTTGGTTCGACTTACATTCCCTGCATCTTCC 1380
Query 741 GCAAGAGTCAAAGCTACAGAGAGATTTGAGGCAATTTATCCCTCACTGAAACAAGTGGCT 800
|||||||| || ||||||||||| ||||||||||| ||||||| ||||| | ||| ||
Sbjct 1381 GCAAGAGTGAAGGCTACAGAGAGGTTTGAGGCAATATATCCCTTGCTGAAGGAGGTGTCT 1440
Query 801 CTTGCCGGTGCACCAGGAAGCGAGGCAATGAAACAAGTCATTAAA-CAGATATTCACTTT 859
||||| ||||| || || || |||||||||| ||||||| | | || |||||||||||
Sbjct 1441 CTTGCTGGTGCTCCTGGGAGTAAGGCAATGAAGCAAGTCAC-ACAGCAAATATTCACTTT 1499
Query 860 -GTCTTTAAAATTAGCTAAAGAAGGAAATCC-T-ACTTTGGCCAAGGAAGCTACAGAAAT 916
| || | ||| ||| |||| |||||| | | || | |||||||||| | | |||
Sbjct 1500 TG-CTCTGAAAGCAGCCGGGGAAGAAAATCCCTTA-TTAG-CCAAGGAAGCGGCTGCAAT 1556
Query 917 CGCTATCTGGTG-TGTGAC-CGAACATGTTGATTGCTGCGAGCACTGGGACAATCTCTAT 974
| |||||||| | | | || | || |||||||||||||| |||| ||||| ||||| |||
Sbjct 1557 CACTATCTGG-GCTCTCACTCAAA-ATGTTGATTGCTGCAAGCATTGGGAGAATCTTTAT 1614
Query 975 AT-GAGGAATTTAGCA-GCTAGTGTTGCTGTTCTAAAAAAGCTTGTGGGCGATTGGAAGG 1032
| || ||||| | | || |||||||||||||| |||||||| | ||||| |||||||
Sbjct 1615 ACCGAC-AATTT-GAAAGCCAGTGTTGCTGTTCTTAAAAAGCTCATTGGCGAGTGGAAGG 1672
Query 1033 A 1033
|
Sbjct 1673 A 1673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67871136840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5