BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933464

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G07890.3 | Symbols: APX1, MEE6, CS1, ATAPX1, ATAPX01 | ascor...   383    6e-106


> AT1G07890.3 | Symbols: APX1, MEE6, CS1, ATAPX1, ATAPX01 | ascorbate 
peroxidase 1 | chr1:2437725-2439665 FORWARD LENGTH=1022
Length=1022

 Score =  383 bits (207),  Expect = 6e-106
 Identities = 288/324 (89%), Gaps = 17/324 (5%)
 Strand=Plus/Plus

Query  46   ATGGCACTCAGCTGGAACTTCCG--TGTCAGTCAAGGACTGGAGGCCCATTCGGAACAAT  103
            ||||||||| |||||||||| ||  ||||| |||||||||||||| ||||||||||||||
Sbjct  159  ATGGCACTCTGCTGGAACTTTCGATTGTCAATCAAGGACTGGAGGTCCATTCGGAACAAT  218

Query  104  GAGGTTTGATGCTGAGCAAGCTCATGGAGCCAACAGTGGTATCCACATTGCTCTTAGGTT  163
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  219  GAGGTTTGACGCTGAGCAAGCTCATGGAGCCAACAGTGGTATCCACATTGCTCTTAGGTT  278

Query  164  GTTTGACCCCATCAGGGAGCAATTCCCTACTATCTCTTTT-CT--T--------GCT-GA  211
            ||| |||||||||||||||||||||||||| ||||||||| ||  |        ||| | 
Sbjct  279  GTTGGACCCCATCAGGGAGCAATTCCCTACCATCTCTTTTGCTGATTTCCATCAGCTTGC  338

Query  212  -GGT-T-GTGGCTGTTGAAGTTACTGGTGGCCCTGAAATTCCTTTCTACCCTGGAAGAGA  268
             ||| | ||||| ||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct  339  TGGTGTTGTGGCCGTTGAAGTTACTGGTGGCCCTGACATTCCTTTCCACCCTGGAAGAGA  398

Query  269  GGACAAGCCCCAGCCACCTCCAGAGGGTCGTCTTCCTGATGCTACAAAGACTTTTGATCA  328
            |||||||||||| |||||||||||||||||||||||||||||||| |||  || ||| ||
Sbjct  399  GGACAAGCCCCAACCACCTCCAGAGGGTCGTCTTCCTGATGCTACCAAGGGTTGTGACCA  458

Query  329  CTAGAGAGATGTCTTTGCTAAGCA  352
             | |||||||||||||||||||||
Sbjct  459  TTTGAGAGATGTCTTTGCTAAGCA  482



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16487821672


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5