BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933470

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G29910.1 | Symbols:  | F-box/RNI-like superfamily protein | ...   459    9e-129
  AT2G29930.1 | Symbols:  | F-box/RNI-like superfamily protein | ...   300    6e-81 
  AT3G12981.1 | Symbols:  | pseudogene of F-box family protein | ...   147    8e-35 


> AT2G29910.1 | Symbols:  | F-box/RNI-like superfamily protein 
| chr2:12751147-12753117 REVERSE LENGTH=1662
Length=1662

 Score =  459 bits (248),  Expect = 9e-129
 Identities = 292/312 (94%), Gaps = 8/312 (3%)
 Strand=Plus/Plus

Query  1     TGCGCTTGCATACCTAAGAGGATGATgaagaagaagaagaagatggaagaGGGAATATGC  60
             ||| |||| |||||||||| |  |||||||||||||||| | | ||||  ||||||||||
Sbjct  1269  TGCCCTTGTATACCTAAGA-G--GATGAAGAAGAAGAAG-A-A-GGAATTGGGAATATGC  1322

Query  61    TGTTTATCGACTTGTCAAGTGAAGGTGCTACGTATTTCAGGGTATCAAGGTACATGTAGA  120
             ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  1323  TGTTTATCGACTTGTCAAGTGAAGGTGCTACATATTTCAGGGTATCAAGGTACATGTAGA  1382

Query  121   GAGCTGAAACAGATGAGGCATTTCTTGGGACATTTGAAATGTCTTGAAACTGTCAATGTG  180
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct  1383  GAGCTGAAACAGATGAGGCATTTCTTGGGAAATTTGAAATGTCTTGAAACTGTCAATGTT  1442

Query  181   GGTGTTGAAGTGAATCACCGAGAAGACAACGATGTTAACAACAAGTACCTGAGAATCACC  240
             ||||||||| |||||||||||||||||||||||||| ||||||| ||||| |||||||| 
Sbjct  1443  GGTGTTGAAATGAATCACCGAGAAGACAACGATGTTGACAACAAATACCTCAGAATCACT  1502

Query  241   GATGCTCTTATGAAGCTTCCCAGAGTTTCATCAAACTGTAGAATCCATTTCTTCTGATTT  300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1503  GATGCTCTTATGAAGCTTCCCAGAGTTTCATCAAACTGTAGAATCCATTTCTTCTGATTT  1562

Query  301   ATCT-CTTCCTC  311
             |||| || ||||
Sbjct  1563  ATCTTCT-CCTC  1573


> AT2G29930.1 | Symbols:  | F-box/RNI-like superfamily protein 
| chr2:12756356-12758558 REVERSE LENGTH=1952
Length=1952

 Score =  300 bits (162),  Expect = 6e-81
 Identities = 260/306 (85%), Gaps = 12/306 (4%)
 Strand=Plus/Plus

Query  1     TGCGCTTGCATAC-CTAAGAGGATGATgaagaagaagaagaagatggaagaGGGA--ATA  57
             ||||||||||| | ||||||||| || ||| |||||||||| || ||| ||  ||  | |
Sbjct  1555  TGCGCTTGCAT-CTCTAAGAGGAGGAAGAAAAAGAAGAAGACGACGGAGGA-TGACGA-A  1611

Query  58    TGCTGTTTATCGACTTGTCAAGTGAAGGTGCTACGTATTTCAGGGTATCAAGGTACATGT  117
             || |||||||| || |||||||| || ||||||  |||||||||||||| |||||| |||
Sbjct  1612  TGTTGTTTATCTACATGTCAAGTCAAAGTGCTAAATATTTCAGGGTATCGAGGTACTTGT  1671

Query  118   AGAGAGCTGAAACAGATGAGGCATTTCTTGG-GACATTTGAAATGTCTTGAAACTGTCAA  176
             | |||||||||||| |||||||||||||||| || |||||||||||||||||||||||||
Sbjct  1672  AAAGAGCTGAAACAAATGAGGCATTTCTTGGAGA-ATTTGAAATGTCTTGAAACTGTCAA  1730

Query  177   TGTGGGTGTTGAAGTGAATCACCGAGAAGACAACGA-TGTTAACAACAAGTACCTGAGAA  235
             |||||||||||| ||||| | | ||||| | || || || ||| |||||||||| ||| |
Sbjct  1731  TGTGGGTGTTGATGTGAAGCGCAGAGAATATAA-GAATGGTAATAACAAGTACCAGAGGA  1789

Query  236   TCACCGATGCTCTTATGAAGCTTCCCAGAGTTTCATCAAACTGT-AGAATCCATTTCTTC  294
             ||||| ||||| ||||| ||||||| ||| |||||||||||||| ||| |||| ||||||
Sbjct  1790  TCACCAATGCTGTTATGGAGCTTCCTAGATTTTCATCAAACTGTCAGA-TCCAATTCTTC  1848

Query  295   TGATTT  300
             ||||||
Sbjct  1849  TGATTT  1854


> AT3G12981.1 | Symbols:  | pseudogene of F-box family protein 
| chr3:4154905-4156051 REVERSE LENGTH=575
Length=575

 Score =  147 bits (79),  Expect = 8e-35
 Identities = 146/176 (83%), Gaps = 14/176 (8%)
 Strand=Plus/Plus

Query  120  AGAGCTGAAACAG-ATGAGGCATTTCTTGGGACATTTGAAATGTCTTGAAACTGTCAATG  178
            ||||||||||| | |||||||||||||||| | |||| ||| ||||||||||||||||||
Sbjct  374  AGAGCTGAAAC-GAATGAGGCATTTCTTGGCAAATTTAAAACGTCTTGAAACTGTCAATG  432

Query  179  TGGGTGTTGAAGTGAATCACCGAGAAGACAACGATGTTAACAACAA-GTACCTGA-GAAT  236
            |   ||| ||| |   | |  | |||| ||| |||||||| || || || ||||| | ||
Sbjct  433  TTAATGTCGAA-T---TGA--GTGAAGGCAAGGATGTTAAGAA-AAGGTTCCTGACG-AT  484

Query  237  CACCGATGCTCTTATGAAGCTTCCCAGAGTTTCATCAAACTGTA-GAATCCATTTC  291
            |||| ||||||||||||||||||||||||||||||||||||||  || ||||||||
Sbjct  485  CACCAATGCTCTTATGAAGCTTCCCAGAGTTTCATCAAACTGTCTGA-TCCATTTC  539



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14728450457


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5