BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933473
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29930.1 | Symbols: | F-box/RNI-like superfamily protein | ... 412 2e-114
AT1G21990.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 135 4e-31
> AT2G29930.1 | Symbols: | F-box/RNI-like superfamily protein
| chr2:12756356-12758558 REVERSE LENGTH=1952
Length=1952
Score = 412 bits (223), Expect = 2e-114
Identities = 468/576 (81%), Gaps = 58/576 (10%)
Strand=Plus/Plus
Query 20 GATGTATCAAG-ATTTCATCTCTGGCTGCCATGTGCTTGAGGAATTATTCCTACATTATG 78
|||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 990 GATGTATC-AGAATTTCATCTCTGGCTGCCCTGTGCTTGAGGAATTATTCCTACATTATG 1048
Query 79 ATAATGACTC-CAGATGCCCGGCTTGGAACGGGCTCGTCTCGAGTCCTTCCATCAAACGA 137
||||||| | || ||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1049 ATAATGAGACACA-ATGCCCGGCTTGGAAAGGGCTCGTATCGAGTCCTTCCATCAAACGG 1107
Query 138 CTGAACATCTATCACAATC-TTCCTGAGTTACGTT-TAAAGGCTTACGATGAATGTTGGT 195
|||||||||||| |||||| |||| |||||||||| | | ||||||| | ||||||| |
Sbjct 1108 CTGAACATCTATGACAATCCTTCC-GAGTTACGTTATGA-GGCTTAC-A--AATGTTGCT 1162
Query 196 TTAAGACACGGAGTCTTATATACCTTGAGTATTCGAGTTATGTCACGGAAA-AGTATGTG 254
|| ||| || || ||| | |||||||| ||||| |||||||| || ||| |||||| |
Sbjct 1163 TTCAGATACCCAGCCTTGTGTACCTTGACTATTCTAGTTATGTGGCG-AAACAGTATGCG 1221
Query 255 GTTGATTTGGGTTCCCTTGAAGAAGCTAGACTCGATCTTCGACTTATagatgacgatgag 314
|||||| ||| |||||||||||||||||||||| || | ||| | || | || |||
Sbjct 1222 GTTGATCTGGTTTCCCTTGAAGAAGCTAGACTCAATATCCGA-T-ATCC--G--GA-GAG 1274
Query 315 aatgagaatgagagcgatgaagatgaggctggtgaggatgagaatgTTTTTGGTGATGTG 374
| | | | ||| | | ||| ||||| | | | | |||| ||||||||
Sbjct 1275 ACTT-G--T-AGATC-A-GAA--TGAGG------A---T-A---T-TTTT-GGTGATGTT 1311
Query 375 AAGGATTTGGTTAAAGGGATGATAAATGTTAAAACCCTTCACTTATCTT-TGATTCTCTT 433
| ||||||| |||||||||| | ||||||||||||||||| ||||||| ||||||||||
Sbjct 1312 ACGGATTTGCTTAAAGGGATAAGCAATGTTAAAACCCTTCATTTATCTTCTGATTCTCTT 1371
Query 434 GAGTAATAAATCCAGGTGTTTCACTTGTGGTGTGATACAATTCCGGTATTTCAAAACCTC 493
||| | ||||||||||||| ||||||||||| ||||| ||||| ||||||
Sbjct 1372 GAG-----------G-TGTTTCACTTGTGCTGTGATACAATGCCGGTGTTTCATAACCTC 1419
Query 494 CTCA-TT-ATATTTTGAGAGTGATAAAGAAAGAGGCTGGCAAGTGGTGCCACTTCTCCTC 551
|| | || || |||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1420 CTTACTTTATCTTTTGAGAGTGACGAAGAAATAGGCTGGCAAGTGGTGCCACTTCTCCTC 1479
Query 552 AGCAACTCTCCAAACCTAGAAACTCTAGTCATCAAG 587
| ||| |||||||||||||||||| |||||||||||
Sbjct 1480 AACAAATCTCCAAACCTAGAAACTTTAGTCATCAAG 1515
> AT1G21990.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr1:7740530-7742106 REVERSE LENGTH=1398
Length=1398
Score = 135 bits (73), Expect = 4e-31
Identities = 104/119 (87%), Gaps = 2/119 (2%)
Strand=Plus/Plus
Query 472 AATTCCGGTATTTCAAAACCTCC-TCA-TTATATTTTGAGAGTGATAAAGAAAGAGGCTG 529
||| |||| ||||||||||||| | | |||| ||||||||||| ||||||||||||||
Sbjct 969 AATGCCGGCGTTTCAAAACCTCCTTAAGTTATCGTTTGAGAGTGACAAAGAAAGAGGCTG 1028
Query 530 GCAAGTGGTGCCACTTCTCCTCAGCAACTCTCCAAACCTAGAAACTCTAGTCATCAAGG 588
|||||||||||||||||| || | || |||||||||||| |||||| ||||||||||||
Sbjct 1029 GCAAGTGGTGCCACTTCTTCTTAACAGCTCTCCAAACCTGGAAACTTTAGTCATCAAGG 1087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32350790668
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5