BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg933473 Length=669 Score E Sequences producing significant alignments: (Bits) Value AT2G29930.1 | Symbols: | F-box/RNI-like superfamily protein | ... 412 2e-114 AT1G21990.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 135 4e-31 > AT2G29930.1 | Symbols: | F-box/RNI-like superfamily protein | chr2:12756356-12758558 REVERSE LENGTH=1952 Length=1952 Score = 412 bits (223), Expect = 2e-114 Identities = 468/576 (81%), Gaps = 58/576 (10%) Strand=Plus/Plus Query 20 GATGTATCAAG-ATTTCATCTCTGGCTGCCATGTGCTTGAGGAATTATTCCTACATTATG 78 |||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 990 GATGTATC-AGAATTTCATCTCTGGCTGCCCTGTGCTTGAGGAATTATTCCTACATTATG 1048 Query 79 ATAATGACTC-CAGATGCCCGGCTTGGAACGGGCTCGTCTCGAGTCCTTCCATCAAACGA 137 ||||||| | || ||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 1049 ATAATGAGACACA-ATGCCCGGCTTGGAAAGGGCTCGTATCGAGTCCTTCCATCAAACGG 1107 Query 138 CTGAACATCTATCACAATC-TTCCTGAGTTACGTT-TAAAGGCTTACGATGAATGTTGGT 195 |||||||||||| |||||| |||| |||||||||| | | ||||||| | ||||||| | Sbjct 1108 CTGAACATCTATGACAATCCTTCC-GAGTTACGTTATGA-GGCTTAC-A--AATGTTGCT 1162 Query 196 TTAAGACACGGAGTCTTATATACCTTGAGTATTCGAGTTATGTCACGGAAA-AGTATGTG 254 || ||| || || ||| | |||||||| ||||| |||||||| || ||| |||||| | Sbjct 1163 TTCAGATACCCAGCCTTGTGTACCTTGACTATTCTAGTTATGTGGCG-AAACAGTATGCG 1221 Query 255 GTTGATTTGGGTTCCCTTGAAGAAGCTAGACTCGATCTTCGACTTATagatgacgatgag 314 |||||| ||| |||||||||||||||||||||| || | ||| | || | || ||| Sbjct 1222 GTTGATCTGGTTTCCCTTGAAGAAGCTAGACTCAATATCCGA-T-ATCC--G--GA-GAG 1274 Query 315 aatgagaatgagagcgatgaagatgaggctggtgaggatgagaatgTTTTTGGTGATGTG 374 | | | | ||| | | ||| ||||| | | | | |||| |||||||| Sbjct 1275 ACTT-G--T-AGATC-A-GAA--TGAGG------A---T-A---T-TTTT-GGTGATGTT 1311 Query 375 AAGGATTTGGTTAAAGGGATGATAAATGTTAAAACCCTTCACTTATCTT-TGATTCTCTT 433 | ||||||| |||||||||| | ||||||||||||||||| ||||||| |||||||||| Sbjct 1312 ACGGATTTGCTTAAAGGGATAAGCAATGTTAAAACCCTTCATTTATCTTCTGATTCTCTT 1371 Query 434 GAGTAATAAATCCAGGTGTTTCACTTGTGGTGTGATACAATTCCGGTATTTCAAAACCTC 493 ||| | ||||||||||||| ||||||||||| ||||| ||||| |||||| Sbjct 1372 GAG-----------G-TGTTTCACTTGTGCTGTGATACAATGCCGGTGTTTCATAACCTC 1419 Query 494 CTCA-TT-ATATTTTGAGAGTGATAAAGAAAGAGGCTGGCAAGTGGTGCCACTTCTCCTC 551 || | || || |||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 1420 CTTACTTTATCTTTTGAGAGTGACGAAGAAATAGGCTGGCAAGTGGTGCCACTTCTCCTC 1479 Query 552 AGCAACTCTCCAAACCTAGAAACTCTAGTCATCAAG 587 | ||| |||||||||||||||||| ||||||||||| Sbjct 1480 AACAAATCTCCAAACCTAGAAACTTTAGTCATCAAG 1515 > AT1G21990.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing protein | chr1:7740530-7742106 REVERSE LENGTH=1398 Length=1398 Score = 135 bits (73), Expect = 4e-31 Identities = 104/119 (87%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 472 AATTCCGGTATTTCAAAACCTCC-TCA-TTATATTTTGAGAGTGATAAAGAAAGAGGCTG 529 ||| |||| ||||||||||||| | | |||| ||||||||||| |||||||||||||| Sbjct 969 AATGCCGGCGTTTCAAAACCTCCTTAAGTTATCGTTTGAGAGTGACAAAGAAAGAGGCTG 1028 Query 530 GCAAGTGGTGCCACTTCTCCTCAGCAACTCTCCAAACCTAGAAACTCTAGTCATCAAGG 588 |||||||||||||||||| || | || |||||||||||| |||||| |||||||||||| Sbjct 1029 GCAAGTGGTGCCACTTCTTCTTAACAGCTCTCCAAACCTGGAAACTTTAGTCATCAAGG 1087 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32350790668 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5