BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933489
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30010.1 | Symbols: TBL45 | TRICHOME BIREFRINGENCE-LIKE 45 |... 1845 0.0
AT5G58600.1 | Symbols: PMR5, TBL44 | Plant protein of unknown f... 117 3e-25
> AT2G30010.1 | Symbols: TBL45 | TRICHOME BIREFRINGENCE-LIKE 45
| chr2:12805724-12809386 FORWARD LENGTH=1466
Length=1466
Score = 1845 bits (999), Expect = 0.0
Identities = 1168/1247 (94%), Gaps = 22/1247 (2%)
Strand=Plus/Plus
Query 1 TTCTTTTTC-TCAA--GCTTCTTTAATGGCGGCTGTTCAATGTCTCACTTTCCTCTTCTT 57
||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 86 TTC-TTTTCTTCAAGCGCTTCTTTAATGGCGGCTGTTCAATGTCTCACTTTCCTCTTCTT 144
Query 58 GTTTCTTCTCCAAAATGCCACGTCAGCTTCACCTCTCCCTTTCTTCCGGC-G--G--CC- 111
||||||||||||||| || ||||||||||||||||||||| ||||||||| | | ||
Sbjct 145 GTTTCTTCTCCAAAACGCGACGTCAGCTTCACCTCTCCCTCTCTTCCGGCGGCCGATCCA 204
Query 112 --G-AACCAAAGCAACTTCGCT-AAGCATCCTCGCCGGAA-TCCGGTGATTCTT-CCGGT 165
| ||||| |||||||||| | ||||||||||||| ||| || |||| || || |||||
Sbjct 205 AAGCAACCACAGCAACTTCG-TGAAGCATCCTCGCC-GAAGTCAGGTGGTT-TTCCCGGT 261
Query 166 GAATCACAGTAGTTGTGATCTGTTCGCCGGAGAGTGGGTGCAGGATGAGACGTACCCGCT 225
|||||| ||||||||||||||||||||||| |||||||||| ||||||||| ||||| ||
Sbjct 262 GAATCATAGTAGTTGTGATCTGTTCGCCGGCGAGTGGGTGCGGGATGAGACTTACCCACT 321
Query 226 TTACCGGGCTAAAGAATGTGGCGGAGGAATCATAGATCCGGGATTTGACTGTCAGACGTA 285
||||||| |||||||||| ||| |||||||||||||||||||||| ||||| ||||| ||
Sbjct 322 TTACCGGTCTAAAGAATGCGGCCGAGGAATCATAGATCCGGGATTCGACTGCCAGACTTA 381
Query 286 CGGCAGACCTGACTCCGACTATCTCAAGTTCCGGTGGAAACCATTCAACTGCAATGTCCC 345
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 382 CGGCAGACCTGACTCCGACTATCTCAAGTTCCGGTGGAAACCTTTCAACTGCAATGTCCC 441
Query 346 TAGATTCAATGGGGTGAAGTTTCTACAAGAAATGAGGGACAAAACGATAATGTTCGTTGG 405
|||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 442 TAGATTCAATGGAGTGAAGTTTCTACAAGAAATGAGAGACAAAACCATAATGTTCGTTGG 501
Query 406 TGATTCATTGGGTAGAAACCAATGGGAGTCGTTGATCTGTATGATCACTTCATCAGCACC 465
|||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 502 TGATTCGTTGGGTAGAAACCAATGGGAGTCGTTGATATGTATGATCTCTTCATCAGCACC 561
Query 466 GTCCATTAATACACACATCATTCATGAAGATCCTCTCTCTACCTTCATGATCCTTGACTA 525
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 562 GTCCATTAATACTCACATCATTCATGAAGATCCTCTCTCTACCTTCAAGATCCTTGACTA 621
Query 526 CAACGTGAAAGTGTCATTCTATAGAGCTCCTTATCTTGTAGACATAGACAAAATTCACGG 585
||||||||| || |||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 622 CAACGTGAAGGTATCATTCTATAGAGCTCCTTATCTTGTAGACATCGACAAAATTAACGG 681
Query 586 AAAGACAACTCTTAAACTCGACGAAATCTCTGTCGATGCATCGACCGCTTGGCGCACAGC 645
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 682 AAAGACAACTCTTAAACTCGACGAAATCTCTGTGGATGCATCGAATGCTTGGCGCACAGC 741
Query 646 CGACGTTCTATTGTTCAACACTGGTCACTGGTGGAGCCACACAGGGTCTTTACGAGGGTG 705
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 742 CGACGTTCTATTGTTCAACACTGGTCACTGGTGGAGCCACACAGGTTCTTTACGAGGGTG 801
Query 706 GGAGCAGATGGAGACAGGAGGGAGATATTACGGCGACATGGATAGGTTAGTGGCGTTGAG 765
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 802 GGAGCAGATGGAGACAGGTGGGAGATATTACGGCGACATGGATAGGTTAGTGGCGTTGAG 861
Query 766 AAAAGGACTAAGAACATGGTCTGGTTGGGTCCTTCGTTATATCAATTCGCCTCTCACTAG 825
|||||||||| |||| |||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 862 AAAAGGACTAGGAACGTGGTCTAGTTGGGTCCTTCGTTATATCAATTCTCCTCTCACTAG 921
Query 826 AGTTTTCTTCCTCTCCGTCTCACCCACACACTACGACCCAAATGAGTGGACTTCAAGATC 885
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 922 AGTTTTCTTCCTCTCGGTCTCACCCACACACTACAACCCAAATGAGTGGACTTCAAGATC 981
Query 886 AAAAACTTCAACGATAACTCAAGGAGCTAAAAGCTGCTACGGACAAACGACACCGTTTAG 945
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 982 AAAAACTTCAACAATAACTCAAGGAGGTAAAAGCTGCTACGGACAAACGACACCGTTTAG 1041
Query 946 TGGAACATCGTATCCAACAAGTTCTTACGTAAACCAAAAGAAAGTTATTGACGACGTGGT 1005
||||||| |||||||||||||||| ||||| ||||| |||||||| || |||||||||||
Sbjct 1042 TGGAACAACGTATCCAACAAGTTCATACGTGAACCAGAAGAAAGTGATAGACGACGTGGT 1101
Query 1006 TAAAGAGATGAAGTCTCATGTCTCATTGATGGATATAACTATGCTCTCTGCTCTTCGCGT 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1102 TAAAGAGATGAAGTCTCATGTCTCATTGATGGATATAACTATGCTCTCTGCTCTTCGTGT 1161
Query 1066 CGACGGTCATCCTTCGATATATAGTGGAGATCTCAACCCTTCTTTTAAAAGAAATCCTGA 1125
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1162 CGACGGTCATCCTTCGATATATAGTGGAGATCTCAACCCTTCTTTGAAAAGAAATCCTGA 1221
Query 1126 CCGTTCTTCTGATTGTAGCCATTGGTGTCTTCCTGGTCT-CCCTGATACGTGGAACCAAT 1184
|||||| |||||||||||||||||||||||||| ||||| ||| || || ||||||||||
Sbjct 1222 CCGTTCATCTGATTGTAGCCATTGGTGTCTTCCGGGTCTTCCC-GACACTTGGAACCAAT 1280
Query 1185 TGTTTTATGCTGCTTTGTTGTATT-AATATTTGATTAACCAAGATCA 1230
|||||||||||||||||||||| | || |||||||||||||||||||
Sbjct 1281 TGTTTTATGCTGCTTTGTTGTACTGAAGATTTGATTAACCAAGATCA 1327
> AT5G58600.1 | Symbols: PMR5, TBL44 | Plant protein of unknown
function (DUF828) | chr5:23683791-23685725 REVERSE LENGTH=1408
Length=1408
Score = 117 bits (63), Expect = 3e-25
Identities = 333/456 (73%), Gaps = 47/456 (10%)
Strand=Plus/Plus
Query 275 TGTCAGACGTACGG-CAGACCTGACTCCGACTATCTCAAGT-TCCGGTGGAAACCATTC- 331
||||||| |||||| | | |||||||| ||||| ||||||| | || ||| |||| ||
Sbjct 335 TGTCAGATGTACGGTC-GTCCTGACTCTGACTACCTCAAGTAT-CGATGGCAACC--TCA 390
Query 332 -AACTGCAATGT-CCCTA-GATTCAATGG-GGTGAAGTTTCTACAAG-AAATG-AGGGAC 385
|| |||||| | ||| | | |||||||| | | ||||||| | ||||| |||| |
Sbjct 391 GAATTGCAATTTACCC-ACG-TTCAATGGTGCT-CAGTTTCT-GTTGAAAATGAAGGG-C 445
Query 386 AAAACGATAATGTTCGTTGGTGATTCATT-GGGTAGAAACCAATGGGAGTCGTTGATCTG 444
||||| |||||||| | ||||||||||| ||| || || ||||||||||| ||||||||
Sbjct 446 AAAACCATAATGTTTGCGGGTGATTCATTGGGGAAG-AATCAATGGGAGTCTTTGATCTG 504
Query 445 TATGATCACTTCATCAGCACCGTCCATTAATACACACATCATTCATGAAG-AT-CCTCTC 502
| || |||||| |||||||||| | ||| | || | || || | | ||||||
Sbjct 505 CCTTATTGTTTCATCTGCACCGTCCACTCGGACAGAAATGA-CCA-GAGGCTTGCCTCTC 562
Query 503 TCTACCTTCATGATCCTT-GACTACAACG-TGAA-AGTGTCATTCTATAGAGCTCCTTAT 559
|| ||||||| ||| ||| || || | | || | ||||||| || | |||||| | |
Sbjct 563 TCCACCTTCA-GATTCTTGGATTA-TGGGAT-AACAATGTCATTTTACAAAGCTCCGT-T 618
Query 560 CTT-GTAGACATAGACAAAATTCACGGAAAGACAACTCTT-AAACTCGACGAAATCTCT- 616
||| || |||||||| |||| || ||| | | || || || || || ||||||
Sbjct 619 CTTGGTGGACATAGATGCTGTTCAAGGCAAG-CGTGTGTTGAAGCTGGATGAGATCTCTG 677
Query 617 GTCGATGCATCGACCGCTTGGC--GCACAGCCGA-CGTTCT-ATTGTTCAACACTGGTCA 672
|| |||| | | ||||||| | || || || | | || | | ||||||||||||||
Sbjct 678 GT-AATGC--C-AATGCTTGGCATG-AC-GCTGATC-TCCTCA-TCTTCAACACTGGTCA 729
Query 673 CTGGTGGAGCCACACAGGGTCTTTACGAGGGTGGGA 708
||||||||||||||| || ||| | | ||| |||||
Sbjct 730 CTGGTGGAGCCACACCGGATCTATGCAAGGATGGGA 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60441456180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5